1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tataatgataactaatgagtataacaggaattgtttccattttttagtttctttatcaatgtttttttgtcatcttgtgaataaacaacttctcaaacagGGGTAAAGATGCTCAAGGTGAAGACGTTATCAAACCATATACCCCTACTACATTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAG
species | Glycine max |
transcript | GLYMA19G29720.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAT GGGTAAAGATGCTCAAGGTGAAGACGTTATCAAACCATATACCCCTACTACEST: gi|298167651|gb|HO012914.1|HO012914
genomic: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttccgttgc ... tctcaaacagGGGTAAAGATGCTCAAGGTGAAGACGTTATCAAACCATATACCCCTACTAC
EST: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAG GGGTAAAGATGCTCAAGGTGAAGACGTTATCAAACCATATACCCCTACTACEST: gi|33389849|gb|CA853056.1|CA853056
genomic: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttccgttgc ... tctcaaacagGGGTAAAGATGCTCAAGGTGAAGACGTTATCAAACCATATACCCCTACTAC
EST: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAG GGGTAAAGATGCTCAAGGTGAAGACGTTATCAAACCATATACCCCTACTAC
genomic: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttccgttgc ... tctcaaacagGGGTAAAGATGCTCAAGGTGAAGACGTTATCAAACCATATACCCCTACTAC
agtttctttatcaatgtttttttgtcatcttgtgaataaacaacttctcaaacagGGGTAAAGATGCTCAAGGTGAAGACGTTATCAAACCATATACCCCTACTACATTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAG
cttctc CT-rich tract
tttatcaatgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tataatgataactaatgagtataacaggaattgtttccattttttagtttctttatcaatgtttttttgtcatcttgtgaataaacaacttctcaaacagGGGTAAAGATGCTCAAGGTGAAGACGTTATCAAACCATATACCCCTACTACATTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAG
- - - - - - - - - - - - - - - -tgtttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataaac