Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15662801|gb|BI700172.1|BI700172EST: TGGTCATGGTTGGATCTGCCTACACTGGGCCTGCCATGAATCCTGCTAAT GCTTTTGGCTGGGCATACTTAAACAACTGGCACAACACATGGGACCAATTC
genomic: TGGTCATGGTTGGATCTGCCTACACTGGGCCTGCCATGAATCCTGCTAATgtgagtgatt ... gtccctgcagGCTTTTGGCTGGGCATACTTAAACAACTGGCACAACACATGGGACCAATTC
EST:
gi|26056358|gb|CA799272.1|CA799272EST: TGGTCATGGTTGGATCTGCCTACACTGGGCCTGCCATGAATCCTGCTAAT GCTTTTGGCTGGGCATACTTAAACAACTGGCACAACACATGGGACCAATTC
genomic: TGGTCATGGTTGGATCTGCCTACACTGGGCCTGCCATGAATCCTGCTAATgtgagtgatt ... gtccctgcagGCTTTTGGCTGGGCATACTTAAACAACTGGCACAACACATGGGACCAATTC
EST:
gi|7639110|gb|AW733439.1|AW733439EST: TGGTCATGGTTGGATCTGCCTACACTGGGCCTGCCATGAATCCTGCTAAT GCTTTTGGCTGGGCATACTTAAACAACTGGCACAACACATGGGACCAATTC
genomic: TGGTCATGGTTGGATCTGCCTACACTGGGCCTGCCATGAATCCTGCTAATgtgagtgatt ... gtccctgcagGCTTTTGGCTGGGCATACTTAAACAACTGGCACAACACATGGGACCAATTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggttctagacctagagatgccaatgaataactgtgatcggttattgtccctgcagGCTTTTGGCTGGGCATACTTAAACAACTGGCACAACACATGGGACCAATTCTATGTATACTGGATTTGTCCCTTCACCGGAGCAATATTGGCTGCTTGGC
gaataac putative branch site (score: 2)
ttgtccct putative PPT
aatgaataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cttctcttgtttttgaatcttctgattttaatttcagtttgattaggttctagacctagagatgccaatgaataactgtgatcggttattgtccctgcagGCTTTTGGCTGGGCATACTTAAACAACTGGCACAACACATGGGACCAATTCTATGTATACTGGATTTGTCCCTTCACCGGAGCAATATTGGCTGCTTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT