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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcacaaaatcaaatgaaaaataaaaagtttctgtctttatttgcttcagctattttttttatacctgtatttgggattctttagtttgtgtgtagtatgtgaatgtgacctttggttttgttatggttgaaactatgcagTTATCTTCCCAAAATGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGGAACAGAACAGGACAACCTTACATTTTGCAAACAAATGTTTTCACAGGAG

Basic information

species Glycine max
transcript GLYMA19G28220.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G28220.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os11g33270.1 (Oryza sativa), 3'ss of exon 1
gtatgcacaaaatcaaatgaaaaataaaaagtttctgtctttatttgcttcagctattttttttatacctgtatttgggattctttagtttgtgtgtagtatgtgaatgtgacctttggttttgttatggttgaaactatgcagTTATCTTCCCAAAATGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGGAACAGAACAGGACAACCTTACATTTTGCAAACAAATGTTTTCACAGGAG
                                           |  ||  | || |||  |     | |    |        |||  | || |   | | |  |  |||  |  | ||||||| ||    | |  | | ||||| | || || || ||  |||||||||||||||| ||||| |||||| |||||||||| || ||  | || |||||  |||| || || || ||| | || |
------------------------------------------gtacgccgccgccattgctccctgatcctcttcc-----ccttctgcttcttgatcggagatcgatg--atgtgtggtttttttgcattggggaatttgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGGAACAGGACGGGGGAGCCGTACATCCTGCAGACGAACGTCTTCTCCGGCG

upper sequence: GLYMA19G28220.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G06850.1 (Arabidopsis thaliana), 3'ss of exon 2
gtatgcacaaaatcaaatgaaaaataaaaagtttctgtctttatttgcttcagctattttttttatacctgtatttgggattctttagtttgtgtgtagtatgtgaatgtgacctttggttttgttatggttgaaac-tatgcagTTATCTTCCCAAAATGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGGAACAGAACAGGACAACCTTACATTTTGCAAACAAATGTTTTCACAGGAG
                                                      ||  | | |   ||  ||   |   | |  |||| |    | ||     | ||    |        ||| |||    | ||   | || || |||| ||    ||    ||||| ||||||||||||||||||||| | || |||||||||||||||||    || || || |||||||| ||||||||||
-----------------------------------------------------gtaagtctctctcactagtcactaataatacttagatcaaatttaaatgattaacaata--------tttattacaaataaattgtgtgaagCTATCATCTACCAACAATGAGCATGACGAGATAGACTTTGAGTTCCTTGGAAACAGAACAGGACAACCAGCTATATTACAGACAAATGTATTCACAGGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33389950|gb|CA853157.1|CA853157
EST:     ACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAATGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactatgcagTTATCTTCCCAAAATGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGG
EST: gi|193595583|gb|FK552264.1|FK552264
EST:     ACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAATGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactatgcagTTATCTTCCCAAAATGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGG
EST: gi|209724892|gb|BW669581.1|BW669581
EST:     ACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAATGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactatgcagTTATCTTCCCAAAATGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGG
EST: gi|10846178|gb|BF069139.1|BF069139
EST:     ACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAATGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactatgcagTTATCTTCCCAAAATGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGG
EST: gi|22523881|gb|BU082692.1|BU082692
EST:     ACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAATGTTTATCACGACGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactatgcagTTATCTTCCCAAAATGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGG
EST: gi|19053501|gb|BM732168.1|BM732168
EST:     ACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAATGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactatgcagTTATCTTCCCAAAATGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGG
EST: gi|151398130|gb|EV268008.1|EV268008
EST:     ACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAATGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactatgcagTTATCTTCCCAAAATGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgtgtagtatgtgaatgtgacctttggttttgttatggttgaaactatgcagTTATCTTCCCAAAATGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGGAACAGAACAGGACAACCTTACATTTTGCAAACAAATGTTTTCACAGGAG
                              ttttgttat  TA-rich tract