1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttaccgactagattgatatatttttatgttgacagaatttaattgcatgttgatttgctaaattgttttaaattgactttagtgtttctgacatttatagGTTGAGGTTAGAGTAAGGGAAGGGAGAACTGTCAACATTCATATGTTCTGCACCCGCCGACCAGGTCTTTTGCTTTCTACCATGAAGGCTTTGGATAACC
species | Glycine max |
transcript | GLYMA19G27480.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAACCAAGCTGCAAAG GTTGAGGTTAGAGTAAGGGAAGGGAGAACTGTCAACATTCATATGTTCTGCEST: gi|193660251|gb|FK603847.1|FK603847
genomic: AGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAACCAAGCTGCAAAGgtgatttttg ... acatttatagGTTGAGGTTAGAGTAAGGGAAGGGAGAACTGTCAACATTCATATGTTCTGC
EST: AGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAACCAAGCTGCAAAG GTTGAGGTTAGAGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTCTGC
genomic: AGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAACCAAGCTGCAAAGgtgatttttg ... acatttatagGTTGAGGTTAGAGTAAGGGAAGGGAGAACTGTCAACATTCATATGTTCTGC
catgttgatttgctaaattgttttaaattgactttagtgtttctgacatttatagGTTGAGGTTAGAGTAAGGGAAGGGAGAACTGTCAACATTCATATGTTCTGCACCCGCCGACCAGGTCTTTTGCTTTCTACCATGAAGGCTTTGGATAACC
ttctgac putative branch site (score: 2)
taaattgttttaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaccgactagattgatatatttttatgttgacagaatttaattgcatgttgatttgctaaattgttttaaattgactttagtgtttctgacatttatagGTTGAGGTTAGAGTAAGGGAAGGGAGAACTGTCAACATTCATATGTTCTGCACCCGCCGACCAGGTCTTTTGCTTTCTACCATGAAGGCTTTGGATAACC
- - - - - - - - - - - - - tgttgac
- - - - - - - - - - - - - - - - - - - - - - gcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtttctg