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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaccgactagattgatatatttttatgttgacagaatttaattgcatgttgatttgctaaattgttttaaattgactttagtgtttctgacatttatagGTTGAGGTTAGAGTAAGGGAAGGGAGAACTGTCAACATTCATATGTTCTGCACCCGCCGACCAGGTCTTTTGCTTTCTACCATGAAGGCTTTGGATAACC

Basic information

species Glycine max
transcript GLYMA19G27480.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G27480.2 (Glycine max), 3'ss of exon 2
lower sequence: AT1G12860.1 (Arabidopsis thaliana), 3'ss of exon 2
ttaccgactagattgatatatttttatgttgacagaatttaattgcatgttgatttgctaaattgttttaaattgactttagtgtttctgacatttatagGTTGAGGTTAGAGTAAGGGAAGGGAGAACTGTCAACATTCATATGTTCTGCACCCGCCGACCAGGTCTTTTGCTTTCTACCATGAAGGCTTTGGATAACC
 ||   |  || |  || |  |||   || |||| |            | ||  ||  | |||| | |||      |||   ||||| |||    ||||||||||||||||| |||| ||||| |   | || ||||| || ||||||||    ||  ||||||||||||| ||||| |||||||  |||||||||||| 
gtaagaataagctcaat-tgctttctagtggacaaa------------gctgtattctttaattttcttagtaacgcttctttgttt-tga----tatagGTTGAGGTTAGATTAAGAGAAGGAAAGGCAGTGAACATACACATGTTCTGTGGACGTAGACCAGGTCTTTTACTTTCCACCATGAGAGCTTTGGATAACT

upper sequence: GLYMA19G27480.2 (Glycine max), 3'ss of exon 2
lower sequence: AT3G26744.2 (Arabidopsis thaliana), 3'ss of exon 3
ttaccgactagattg-atata-tttttatgttgacagaatttaattgcatgttgatttgctaaattgttttaaattgactttagtgtttctgacatttatagGTTGAGGTTAGAGTAAGGGAAGGGAGAACTGTCAACATTCATATGTTCTGCACCCGCCGACCAGGTCTTTTGCTTTCTACCATGAAGGCTTTGGATAACC
 ||  ||||| |||   ||||  ||||   | ||| | |   ||    |    ||||        ||||| | |  || |    || ||||    || | |||||||||||||| |||||||||| ||| | || |||||||||||||||||    ||  |||| ||||| |||||  |||||||||| ||||||||||| |
gtaaggactatattctgtataacttttgcttagactggaaagaagaaaacaaagattca------tgtttgaga--gattactctgcttct--ttttcacagGTTGAGGTTAGATTAAGGGAAGGAAGAGCAGTGAACATTCATATGTTCTGTGGTCGTAGACCGGGTCTGTTGCTCGCTACCATGAAAGCTTTGGATAATC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10255250|gb|BE823016.1|BE823016
EST:     AGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAACCAAGCTGCAAAG                         GTTGAGGTTAGAGTAAGGGAAGGGAGAACTGTCAACATTCATATGTTCTGC
genomic: AGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAACCAAGCTGCAAAGgtgatttttg ... acatttatagGTTGAGGTTAGAGTAAGGGAAGGGAGAACTGTCAACATTCATATGTTCTGC
EST: gi|298178876|gb|HO024611.1|HO024611
EST:     AGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAACCAAGCTGCAAAG                         GTTGAGGTTAGAGTAAGGGAAGGGAGAACTGTCAACATTCATATGTTCTGC
genomic: AGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAACCAAGCTGCAAAGgtgatttttg ... acatttatagGTTGAGGTTAGAGTAAGGGAAGGGAGAACTGTCAACATTCATATGTTCTGC
EST: gi|23730171|gb|BU763190.1|BU763190
EST:     AGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAACCAAGCTGCAAAG                         GTTGAGGTTAGAGTAAGGGAAGGGAGAACTGTCAACATTCATATGTTCTGC
genomic: AGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAACCAAGCTGCAAAGgtgatttttg ... acatttatagGTTGAGGTTAGAGTAAGGGAAGGGAGAACTGTCAACATTCATATGTTCTGC
EST: gi|193660251|gb|FK603847.1|FK603847
EST:     AGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAACCAAGCTGCAAAG                         GTTGAGGTTAGAGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTCTGC
genomic: AGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAACCAAGCTGCAAAGgtgatttttg ... acatttatagGTTGAGGTTAGAGTAAGGGAAGGGAGAACTGTCAACATTCATATGTTCTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgttgatttgctaaattgttttaaattgactttagtgtttctgacatttatagGTTGAGGTTAGAGTAAGGGAAGGGAGAACTGTCAACATTCATATGTTCTGCACCCGCCGACCAGGTCTTTTGCTTTCTACCATGAAGGCTTTGGATAACC
                                        ttctgac  putative branch site (score: 2)
             taaattgttttaaatt  TA-rich tract