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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttacaaatgctgttaactcttacattgtttttggtagaggatgtactataatctttctttgttgatctatgctgagaattaagattaggatgccatcttatgcagtgtcttatgatttcagGCTGTACAAGGGGTTAGTGCCTCTCTGGGGACGACAAATTCCAT

Basic information

species Glycine max
transcript GLYMA19G27380.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207681920|gb|GD662037.1|GD662037
EST:     GGTTTGTCTGATGGGCTCCCAAAATTTGTCAGATCTGAAGGAACCTTAGG                         GCTGTACAAGGGGTTAGTGCCTCTCTGGGGACGACAAATTCCAT
genomic: GGTTTGTCTGATGGGCTCCCAAAATTTGTCAGATCTGAAGGAACCTTAGGgtatgcttac ... atgatttcagGCTGTACAAGGGGTTAGTGCCTCTCTGGGGACGACAAATTCCAT
EST: gi|10845648|gb|BF068722.1|BF068722
EST:     GGTTTGTCTGATGGGCTCCCAAAATTTGTCAGATCTGAAGGAACCTTAAG                         GCTGTACAAGGGGTTAGTGCCTCTCTGGGGACGACAAATTCCAT
genomic: GGTTTGTCTGATGGGCTCCCAAAATTTGTCAGATCTGAAGGAACCTTAGGgtatgcttac ... atgatttcagGCTGTACAAGGGGTTAGTGCCTCTCTGGGGACGACAAATTCCAT
EST: gi|207703091|gb|GD684883.1|GD684883
EST:     GGTTTGTCTGATGGGCTCCCAAAATTTGTCAGATCTGAAGGAACCTTAGG                         GCTGTACAAGGGGTTAGTGCCTCTCTGGGGACGACAAATTCCAT
genomic: GGTTTGTCTGATGGGCTCCCAAAATTTGTCAGATCTGAAGGAACCTTAGGgtatgcttac ... atgatttcagGCTGTACAAGGGGTTAGTGCCTCTCTGGGGACGACAAATTCCAT
EST: gi|298168584|gb|HO009514.1|HO009514
EST:     GGTTTGTCTGATGGGCTCCCAAAATTTGTCAGATCTGGAGGAACCTTAGG                         GCTGTACAAGGGGTTAGTGCCTCTCTGGGGACGACAAATTCCAT
genomic: GGTTTGTCTGATGGGCTCCCAAAATTTGTCAGATCTGAAGGAACCTTAGGgtatgcttac ... atgatttcagGCTGTACAAGGGGTTAGTGCCTCTCTGGGGACGACAAATTCCAT
EST: gi|192295707|gb|FG990561.1|FG990561
EST:     GGTTTGTCTGATGGGCTCCCAAAATTTGTCAGATCTGAAGGAACCTTAGG                         GCTGTACAAGGGGTTAGTGCCTCTCTGGGGACGACAAATTCCAT
genomic: GGTTTGTCTGATGGGCTCCCAAAATTTGTCAGATCTGAAGGAACCTTAGGgtatgcttac ... atgatttcagGCTGTACAAGGGGTTAGTGCCTCTCTGGGGACGACAAATTCCAT
EST: gi|58024028|gb|CX710769.1|CX710769
EST:     TGAAGGAACCTTAGG                         GCTGTACAAGGGGTTAGTGCCTCTCTGGGGACGACAAATTCCAT
genomic: TGAAGGAACCTTAGGgtatgcttac ... atgatttcagGCTGTACAAGGGGTTAGTGCCTCTCTGGGGACGACAAATTCCAT
EST: gi|208231650|gb|GE034441.1|GE034441
EST:     GGTTTGTCTGATGGGCTCCCAAAATTTGTCAGATCTGAAGGAACCTTAGG                         GCTGTACAAGGGGTTAGTGCCTCTCTGGGGACGACAAATTCCAT
genomic: GGTTTGTCTGATGGGCTCCCAAAATTTGTCAGATCTGAAGGAACCTTAGGgtatgcttac ... atgatttcagGCTGTACAAGGGGTTAGTGCCTCTCTGGGGACGACAAATTCCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatgctgagaattaagattaggatgccatcttatgcagtgtcttatgatttcagGCTGTACAAGGGGTTAGTGCCTCTCTGGGGACGACAAATTCCAT
          aattaagatta  TA-rich tract