Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207748090|gb|GD719409.1|GD719409EST: TAAAACTAATTCATCACTGTGTTAAACTTCAGCGCTTATGG ATAATGGATTGCATTGGAGACAAAGGACTAGGTGTTGTAGCTACGACACGT
genomic: TAAAACTAATTCATCACTGTGTTAAACTTCAGCGCTTATGGgtaaatctat ... acttgtgcagATAATGGATTGCATTGGAGACAAAGGACTAGGTGTTGTAGCTACGACATGT
EST:
gi|208044900|gb|GD843676.1|GD843676EST: TAAAACTAATTCATCACTGTGTTAAACTTCAGCGCTTATGG ATAATGGATTGCATTGGAGACAAAGGACTAGGTGTTGTAGCTACGACACGT
genomic: TAAAACTAATTCATCACTGTGTTAAACTTCAGCGCTTATGGgtaaatctat ... acttgtgcagATAATGGATTGCATTGGAGACAAAGGACTAGGTGTTGTAGCTACGACATGT
EST:
gi|254322836|gb|GR839857.1|GR839857EST: GTGCTCTGGTAAAACTAATTCATCACTGTGTTAAACTTCAGCGCTTATGG ATAATGGATTGCATTGGAGACAAAGGACTAGGTGTTGTAGCTACGACATGT
genomic: GTGCTCTGGTAAAACTAATTCATCACTGTGTTAAACTTCAGCGCTTATGGgtaaatctat ... acttgtgcagATAATGGATTGCATTGGAGACAAAGGACTAGGTGTTGTAGCTACGACATGT
EST:
gi|5760644|gb|AI966007.1|AI966007EST: GTGCTCTGGTAAAACTAATTCATCACTGTGTTAAACTTCAGCGCTTATGG ATAATGGATTGCATTGGAGACAAAGGACTAGGTGTTGTAGCTACGACATGT
genomic: GTGCTCTGGTAAAACTAATTCATCACTGTGTTAAACTTCAGCGCTTATGGgtaaatctat ... acttgtgcagATAATGGATTGCATTGGAGACAAAGGACTAGGTGTTGTAGCTACGACATGT
EST:
gi|4306821|gb|AI443959.1|AI443959EST: GTGCTCTGGTAAAACTAATTCATCACTGTGTTAAACTTCAGCGCTTATGG ATAATGGATTGCATTGGAGACA
genomic: GTGCTCTGGTAAAACTAATTCATCACTGTGTTAAACTTCAGCGCTTATGGgtaaatctat ... acttgtgcagATAATGGATTGCATTGGAGACA
EST:
gi|254338799|gb|GR847516.1|GR847516EST: GTGCTCTGGTAAAACTAATTCATCACTGTGTTAAACTTCAGCGCTTATGG ATAATGGATTGCATTGGAGACAAAGGACTAGGTGTTGTAGCTACGACATGT
genomic: GTGCTCTGGTAAAACTAATTCATCACTGTGTTAAACTTCAGCGCTTATGGgtaaatctat ... acttgtgcagATAATGGATTGCATTGGAGACAAAGGACTAGGTGTTGTAGCTACGACATGT
EST:
gi|192321373|gb|FK012134.1|FK012134EST: GTGCTCTGGTAAAACTAATTCATCACTGTGTTAAACTTCAGCGCTTATGG ATAATGGATTGCATTGGAGACAAAGGACTAGGTGTTGTAGCTACGACATGT
genomic: GTGCTCTGGTAAAACTAATTCATCACTGTGTTAAACTTCAGCGCTTATGGgtaaatctat ... acttgtgcagATAATGGATTGCATTGGAGACAAAGGACTAGGTGTTGTAGCTACGACATGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttatatttgttgattcttatattggtgaatatcaataaattttagacttgtgcagATAATGGATTGCATTGGAGACAAAGGACTAGGTGTTGTAGCTACGACATGTAAAGATTTGCAAGAATTGAGGGTTTTTCCATCTGTTCCCTTTGGGGATC
tgttgat putative branch site (score: 4)
ttatattggtgaatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaatctatcaaattcaaatcttttttctgttatatttgttgattcttatattggtgaatatcaataaattttagacttgtgcagATAATGGATTGCATTGGAGACAAAGGACTAGGTGTTGTAGCTACGACATGTAAAGATTTGCAAGAATTGAGGGTTTTTCCATCTGTTCCCTTTGGGGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA