1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagtttcctattgttttctatattgttttctctacttcaggttacctcctgtttctgctctgctgcattttagttcatctctttttacaaacaagtgctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGTATTTGCTGGTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCT
species | Glycine max |
transcript | GLYMA19G27250.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGTEST: gi|15815757|gb|BI788032.1|BI788032
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGTEST: gi|23064074|gb|BU578847.1|BU578847
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGTEST: gi|13791278|gb|BG653869.1|BG653869
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
ttctgctctgctgcattttagttcatctctttttacaaacaagtgctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGTATTTGCTGGTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCT
ctattttc CT-rich tract
tttttacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtttcctattgttttctatattgttttctctacttcaggttacctcctgtttctgctctgctgcattttagttcatctctttttacaaacaagtgctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGTATTTGCTGGTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG