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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttcctattgttttctatattgttttctctacttcaggttacctcctgtttctgctctgctgcattttagttcatctctttttacaaacaagtgctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGTATTTGCTGGTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCT

Basic information

species Glycine max
transcript GLYMA19G27250.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21479709|gb|BQ576392.1|BQ576392
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|192304252|gb|FG993536.1|FG993536
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|10843631|gb|BF066906.1|BF066906
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|42722935|gb|CK768834.1|CK768834
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|213619743|gb|DB967365.1|DB967365
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|12773643|gb|BG238570.1|BG238570
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|19346082|gb|BM890962.1|BM890962
EST:     TTTGATGTAATCA--GCTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|308099225|gb|HO761403.1|HO761403
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|18848454|gb|BM567677.1|BM567677
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|192308235|gb|FK002747.1|FK002747
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|6913960|gb|AW395490.1|AW395490
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|22928890|gb|BU546029.1|BU546029
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|15815757|gb|BI788032.1|BI788032
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|254330168|gb|GR839721.1|GR839721
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|308097960|gb|HO761131.1|HO761131
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|7590568|gb|AW706317.1|AW706317
EST:     TCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|209727179|gb|BW660158.1|BW660158
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|57574048|gb|CX547023.1|CX547023
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|31469976|gb|CD412004.1|CD412004
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|192320995|gb|FK012391.1|FK012391
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|23064074|gb|BU578847.1|BU578847
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|254330169|gb|GR839722.1|GR839722
EST:     TTTGATGT-ATCAGT-GTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|9259491|gb|BE347646.1|BE347646
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|37995509|gb|CF807098.1|CF807098
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|27425237|gb|CA936757.1|CA936757
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|13791278|gb|BG653869.1|BG653869
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|192308236|gb|FK002748.1|FK002748
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|7693381|gb|AW761474.1|AW761474
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgctctgctgcattttagttcatctctttttacaaacaagtgctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGTATTTGCTGGTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCT
                                             ctattttc  CT-rich tract
                             tttttacaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtttcctattgttttctatattgttttctctacttcaggttacctcctgtttctgctctgctgcattttagttcatctctttttacaaacaagtgctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGTATTTGCTGGTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG