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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atattggttacatttttaatttgagtttctgctctcaagatatttgtgcagattggcatcttttgtgtacaaactccttacatctgattgcactctgcagGTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCAGTTGGTACCAAA

Basic information

species Glycine max
transcript GLYMA19G26870.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G26870.2 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os09g33520.1 (Oryza sativa), 3'ss of exon 3
atattggttacatt-tttaattt----gagtttctgctctcaagatatttgtgcagattg-gcatcttttgtgtacaaactccttacatctgattgcactctgcagGTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCAGTTGGTACCAAA
 |  |  || |||| |||| | |     |   | || |     |  || ||    |||   |  ||| ||     || |  | | ||   ||| |    |   |||||  | || || ||||| ||||| || || || || ||||| |||||||||||||||||||||||||| | ||| ||||| 
-tggttcttccattatttagtcttttaaaagatttgttgaattgtcatatgcttcgatgatgtgtctatttcac-cagaagcataactcttgact----ttgacagGTTGTCAGTAACCCAGAGAAGACACCGCTACATACCTTCTTCTGCAACTATGATTTGAGTGACATGCCTGCTGGAACCAAG

upper sequence: GLYMA19G26870.2 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G138425_T02 (Zea mays), 3'ss of exon 3
atattggttacatt-tttaatttgagtttctgctctcaagatatttgtgcagattggcatct---tttgtgtacaaactccttacatctgattgcactctgcagGTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCAGTTGGTACCAAA
  |    |||||   | | ||||     ||||| |       | || ||    |||   ||    | | |||||||  |    | |    | ||   |   |||||| ||||||| ||||| |||||||| ||||| |||||||| ||||||||||| ||||||||||||||   ||| ||||| 
-aaagatttacaggatctgatttacacatctgcgcctgcc-cacttttgggagttgtattccgagtctctgtacaa--ttgaaataaaaaaatgactttgacagGTGGTAAGCAACCCAGAGAAGACTCCACTTCATACTTTCTTCTGCAACTATGACTTGAGTGACATGCCTCCTGGAACCAAG

upper sequence: GLYMA19G26870.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv14s0068g01450.t01 (Vitis vinifera), 3'ss of exon 2
atattggttacattttta-atttgagtt--tctgctctcaagatatttgtgcagattggcatcttttgtgtacaaactccttacatctgattgcactctg----cagGTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCAGTTGGTACCAAA
       ||   |||| | | |  |||   ||       || || |||| ||  || |   |||  |   ||     |  | |  | | |||    |||     ||||| || ||||||||||| ||||| || || ||| | |||||||||||||||||||||||||||||||||  ||||||||||
------attgagttttaacactccagtcaatccaggtgtaacatttttgggctcatggatctctcct-cctattctgttttcattttttattatcatcttttcccagGTTCTCAGCAATCCAGAGAAGACACCCCTACACTCGTTCTTTTGCAACTATGATTTGAGTGACATGCCAAGTGGTACCAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19053490|gb|BM732157.1|BM732157
EST:     AAATTGTAAAAAGCCGTTTGCGTATACCAATGAAGGGACGGATTCAACTG                         GTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTAT
genomic: AAATTGTAAAAAGCCGTTTGCGTATACCAATGAAGGGACGGATTCAACTGgtattgatat ... cactctgcagGTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgcagattggcatcttttgtgtacaaactccttacatctgattgcactctgcagGTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCAGTTGGTACCAAA
            atctttt  TA-rich tract