1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagtacttattagttattaaatgacatctatttttctatcttgaagattattaatcaaatacttcatgatgactgattctttctatgttttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTACCTTTATTTCTTTATAACTATACTACTCATCAGCTGCATGGTATTTTTGA
species | Glycine max |
transcript | GLYMA19G25870.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTACEST: gi|16345270|gb|BI970865.1|BI970865
genomic: TGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTGgtgagtactt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTAC
EST: AATGCAGGAAGACTTGAAACGTCAGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAGNNNAATAACACCAGGGCTACEST: gi|298165387|gb|HO011436.1|HO011436
genomic: AATGCAGGAAGACTTGAAACGTCAGCTATTTGgtgagtactt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTAC
EST: GTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTACEST: gi|11275143|gb|BF325466.1|BF325466
genomic: GTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTGgtgagtactt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTAC
EST: TGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTACEST: gi|254340597|gb|GR850899.1|GR850899
genomic: TGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTGgtgagtactt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTAC
EST: TGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTACEST: gi|15286212|gb|BI470103.1|BI470103
genomic: TGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTGgtgagtactt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTAC
EST: TGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTACEST: gi|10237029|gb|BE805917.1|BE805917
genomic: TGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTGgtgagtactt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTAC
EST: CTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTACEST: gi|15663461|gb|BI700832.1|BI700832
genomic: CTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTGgtgagtactt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTAC
EST: TGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTATEST: gi|7233125|gb|AW568475.1|AW568475
genomic: TGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTGgtgagtactt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTAC
EST: TGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTACEST: gi|192334782|gb|FK025273.1|FK025273
genomic: TGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTGgtgagtactt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTAC
EST: TTGAAACGTCAGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTACEST: gi|254339779|gb|GR857904.1|GR857904
genomic: TTGAAACGTCAGCTATTTGgtgagtactt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTAC
EST: ATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTACEST: gi|254335019|gb|GR844804.1|GR844804
genomic: ATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTGgtgagtactt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTAC
EST: TGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTACEST: gi|8283592|gb|BE021151.1|BE021151
genomic: TGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTGgtgagtactt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTAC
EST: GTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTACEST: gi|192304166|gb|FG993492.1|FG993492
genomic: GTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTGgtgagtactt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTAC
EST: TGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTACEST: gi|4289775|gb|AI437974.1|AI437974
genomic: TGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTGgtgagtactt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTAC
EST: TTGAAACGTCAGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTACEST: gi|7693250|gb|AW761345.1|AW761345
genomic: TTGAAACGTCAGCTATTTGgtgagtactt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTAC
EST: GAAGACTTGAAACGTCAGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTACEST: gi|58019845|gb|CX706587.1|CX706587
genomic: GAAGACTTGAAACGTCAGCTATTTGgtgagtactt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTAC
EST: TGTCTGTACCAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTAC
genomic: TGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTGgtgagtactt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTAC
aagattattaatcaaatacttcatgatgactgattctttctatgttttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTACCTTTATTTCTTTATAACTATACTACTCATCAGCTGCATGGTATTTTTGA
ttctttctatgttttt CT-rich tract
tattaatcaaatactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtacttattagttattaaatgacatctatttttctatcttgaagattattaatcaaatacttcatgatgactgattctttctatgttttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCAATAACACCAGGGCTACCTTTATTTCTTTATAACTATACTACTCATCAGCTGCATGGTATTTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC