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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgataattaattaattaaaaacaagacaagaatttcatgtgcaggaattttgtttcatcaatttaattagtgtttagcttgttctattcacaaaatcatatatattaatacattattgttaccatacacaatgcatgtatggatgatgttaagacagGTTATGTTGGTGACCCTGAAGCAACTTCAGCAACTTTGGTGGATGGGTGGTTAAGGACTGGGGACCTCTGTTATTTTGATAACGAAGGGTTCTTGTATGT

Basic information

species Glycine max
transcript GLYMA19G22460.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337949|gb|CO981815.1|CO981815
EST:     TCCCTGTGAACAAGGAGAACTTTGGATCAAATCACCTAGTATTATGAAAG                         GTTATGTTGGTGACCCTGAAGCAACTTCAGCAACTTTGGTGGATGGGTGGT
genomic: TCCCTGTGAACAAGGAGAACTTTGGATCAAATCACCTAGTATTATGAAAGgtaattgata ... gttaagacagGTTATGTTGGTGACCCTGAAGCAACTTCAGCAACTTTGGTGGATGGGTGGT
EST: gi|22524980|gb|BU083791.1|BU083791
EST:     TCCCTGTGAACAAGGAGAACTTTGGATCAAATCACCTAGTATTATGAAAG                         GTTATGTTGGTGACCCTGAAGCAACTTCAGCAACTTTGGTGGATGGGTGGT
genomic: TCCCTGTGAACAAGGAGAACTTTGGATCAAATCACCTAGTATTATGAAAGgtaattgata ... gttaagacagGTTATGTTGGTGACCCTGAAGCAACTTCAGCAACTTTGGTGGATGGGTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattaatacattattgttaccatacacaatgcatgtatggatgatgttaagacagGTTATGTTGGTGACCCTGAAGCAACTTCAGCAACTTTGGTGGATGGGTGGTTAAGGACTGGGGACCTCTGTTATTTTGATAACGAAGGGTTCTTGTATGT
 tattaat  putative branch site (score: 2)
     atacattattgtta  TA-rich tract