1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctatggaaggactatgattgtggtttgaatcccataaaagattttattagtgttatgcttctattaaccactgatgcatctaactgcgtgattttttcagATTTTAATTCAAGGAATGCCTCGAGCAGGTACATATGAAGATATAGGACGCATCCTCTCCGGTTTTGAATTTGATTCCTCCTCCATTAGCTTGTTTTTAA
species | Glycine max |
transcript | GLYMA19G18340.6 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTAATCTTCACCAATGGGACCAAGTAAAACCATATGACGGAAAAACT ATTTTAATTCAAGGAATGCCTCGAGCAGGTACATATGAAGATATAGGACGCEST: gi|254316869|gb|GR828406.1|GR828406
genomic: GTTAATCTTCACCAATGGGACCAAGTAAAACCATATGACGGAAAAACTgtcagtacag ... attttttcagATTTTAATTCAAGGAATGCCTCGAGCAGGTACATATGAAGATATAGGACGC
EST: GTTAATCTTCACCAATGGGACCAAGTAAAACCATATGACGGAAAAACT ATTTTAATTCAAGGAATGCCTCGAGCAGGTACATATGAAGATATAGGACGCEST: gi|6567025|gb|AW234652.1|AW234652
genomic: GTTAATCTTCACCAATGGGACCAAGTAAAACCATATGACGGAAAAACTgtcagtacag ... attttttcagATTTTAATTCAAGGAATGCCTCGAGCAGGTACATATGAAGATATAGGACGC
EST: GTTAATCTTCACCAATGGGACCAAGTAAAACCATATGACGGAAAAACT ATTTTAATTCAAGGAATGCCTCGAGCAGGTACATATGAAGATATAGGACGCEST: gi|58024651|gb|CX711392.1|CX711392
genomic: GTTAATCTTCACCAATGGGACCAAGTAAAACCATATGACGGAAAAACTgtcagtacag ... attttttcagATTTTAATTCAAGGAATGCCTCGAGCAGGTACATATGAAGATATAGGACGC
EST: GTTAATCTTCACCAATGGGACCAAGTAAAACCATATGACGGAAAAACT ATTTTAATTCAAGGAATGCCTCGAGCAGGTACATATGAAGATATAGGACGC
genomic: GTTAATCTTCACCAATGGGACCAAGTAAAACCATATGACGGAAAAACTgtcagtacag ... attttttcagATTTTAATTCAAGGAATGCCTCGAGCAGGTACATATGAAGATATAGGACGC
attagtgttatgcttctattaaccactgatgcatctaactgcgtgattttttcagATTTTAATTCAAGGAATGCCTCGAGCAGGTACATATGAAGATATAGGACGCATCCTCTCCGGTTTTGAATTTGATTCCTCCTCCATTAGCTTGTTTTTAA
ttttttc CT-rich tract
ttctattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatggaaggactatgattgtggtttgaatcccataaaagattttattagtgttatgcttctattaaccactgatgcatctaactgcgtgattttttcagATTTTAATTCAAGGAATGCCTCGAGCAGGTACATATGAAGATATAGGACGCATCCTCTCCGGTTTTGAATTTGATTCCTCCTCCATTAGCTTGTTTTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC