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gtaaggactagccattcatttcatttccaatgagtttccaattttttttcagtgaatattaccactattataactgtaccaagaaagaaatgaacatcactatttcttttggcagGAAAATGTCAAATATCTCCCTGGAATCAAGCTTGGCAAAAATGTTGTTGCAGATCCAGACCTTGAAAGTGCCG
species | Glycine max |
transcript | GLYMA19G07410.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGACACTACTAAGTGGTGAGAAGCTCACAGATGTCATCAATCGAACCAAT GAAAATGTCAAATATCTCCCTGGAATCAAGCTTGGCAAAAATGTTGTTGCAEST: gi|42722611|gb|CK768510.1|CK768510
genomic: AGACACTACTAAGTGGTGAGAAGCTCACAGATGTCATCAATCGAACCAATgtaaggacta ... cttttggcagGAAAATGTCAAATATCTCCCTGGAATCAAGCTTGGCAAAAATGTTGTTGCA
EST: AGACACTACTAAGTGGTGAGAAGCTCACAGATGTCATCAATCGAACCAAT GAAAATGTCAAATATCTCCCTGGAATCAAGCTTGGCAAAAATGTTGTTGCAEST: gi|46492920|gb|CN472476.1|CN472476
genomic: AGACACTACTAAGTGGTGAGAAGCTCACAGATGTCATCAATCGAACCAATgtaaggacta ... cttttggcagGAAAATGTCAAATATCTCCCTGGAATCAAGCTTGGCAAAAATGTTGTTGCA
EST: AGACACTACTAAGTGGTGAGAAGCTCACAGATGTCATCAATCGAACCAAT GAAAATGTCAAATATCTCCCTGGAATCAAGCTTGGCAAAAATGTTGTTGCAEST: gi|8284111|gb|BE021670.1|BE021670
genomic: AGACACTACTAAGTGGTGAGAAGCTCACAGATGTCATCAATCGAACCAATgtaaggacta ... cttttggcagGAAAATGTCAAATATCTCCCTGGAATCAAGCTTGGCAAAAATGTTGTTGCA
EST: GAAGCTCACAGATGTCATCAATCGAACCAAT GAAAATGTCAAATATCTCCCTGGAATCAAGCTTGGCAAAAATGTTGTTGCA
genomic: GAAGCTCACAGATGTCATCAATCGAACCAATgtaaggacta ... cttttggcagGAAAATGTCAAATATCTCCCTGGAATCAAGCTTGGCAAAAATGTTGTTGCA
accactattataactgtaccaagaaagaaatgaacatcactatttcttttggcagGAAAATGTCAAATATCTCCCTGGAATCAAGCTTGGCAAAAATGTTGTTGCAGATCCAGACCTTGAAAGTGCCG
ttataac putative branch site (score: 2)
tcactatttctttt putative PPT
tattataact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggactagccattcatttcatttccaatgagtttccaattttttttcagtgaatattaccactattataactgtaccaagaaagaaatgaacatcactatttcttttggcagGAAAATGTCAAATATCTCCCTGGAATCAAGCTTGGCAAAAATGTTGTTGCAGATCCAGACCTTGAAAGTGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT