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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcaatatgtatcaaatctgttcctatctctgaccaaattttattcttccaaaacaagcacttggttttgagttttgatggttgatctgcttgtttgcagCACGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT

Basic information

species Glycine max
transcript GLYMA19G06370.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os12g19381.1 (Oryza sativa), 3'ss of exon 2
atcaatatgtatcaaatctgttcctatctctgaccaaattttattcttccaaaacaagcacttggttttgagttttgatggttgatctgcttgtttgcagCACGGTTTC----GTGTACCGTGAGCACAAC-AGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTG-CACTGATGCTT-------
       |   || |  | ||    | | | |  |    |   | ||   |   || | ||| |    || |    || | |   | || | |  ||||     |   |    |||  |   |||| | |  ||| ||  | |  |   | |    |  |  |   |    | |     | | | ||  ||  |   | | || ||       
------gttcgtcta--ccgtgagaaccacaggtctc-ctgggtactatgatggcaggtactggaccatgtg----gaagctgcctatgttcggatgcactgatgccacccagGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCATATCCAGATGCATTTGTTCGCATCATCGGCTTCGACAACGTCAGGCAGGTGCAGTTGATTAGCTTCA

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G38430.1 (Arabidopsis thaliana), 3'ss of exon 3
---------------------------------------------------------------------atcaatatgtatcaaatctgttcctatctctgaccaaattttattcttccaaaacaagcacttggttttgagt---tttgatggttgatctgcttgtttgcagCACGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT
                                                                     || |   | || |     | ||   | | |  |  | | | |||            | |      | |  | |   ||  ||||||    |   |||||  ||||||| || |||||||||||||||   |   | || ||||||||||||||||| |||||||| ||||||||||| ||  |||| || ||||| ||  |  
gtaatatacacaaaacttttcctttgtctactaatcattattatttttttcgttttcattgctagaaatattagcctataaccggattttttagaac-cgaaatagactatatcaccttgtgcatatcctccaatatcaattgtattgaatggttttcttatgtgtttatagCACGGATTTGTGTACCGTGAGCACGGAAACACTCCCGGATACTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCG

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G38410.1 (Arabidopsis thaliana), 3'ss of exon 2
--------------------------------------------------------------atcaatat--gtatcaaatctgttcctatc---tctgaccaaattttattcttccaaaacaagcacttggttttgagt---tttgatggttgatctgcttgtttgcagCACGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT
                                                              |  |||||  |  |  || | | |  | |     |  |  | | | |||            | |      | |  | |   ||  ||||||    |   |||||  ||||||| || |||||||||||||||   |   | || ||||||||||||||||| |||||||| ||||||||||| ||  |||| || ||||| ||  |  
gtaataaacacaaaagttttcttttgtctactaatcattattatttattcgttttcattgctagaaatattagcctataaccggattttgtagaaccgaaatagactatatcaccttgtgcatatcctccaatatcaattgtattgaatggttttcttatgtgtttatagCACGGATTTGTGTACCGTGAGCACGGAAACACTCCCGGATACTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCG

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G38410.2 (Arabidopsis thaliana), 3'ss of exon 2
--------------------------------------------------------------atcaatat--gtatcaaatctgttcctatc---tctgaccaaattttattcttccaaaacaagcacttggttttgagt---tttgatggttgatctgcttgtttgcagCACGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT---------------------
                                                              |  |||||  |  |  || | | |  | |     |  |  | | | |||            | |      | |  | |   ||  ||||||    |   |||||  ||||||| || |||||||||||||||   |   | || ||||||||||||||||| |||||||| ||||||||||| ||  |||| || ||||| ||  |                       
gtaataaacacaaaagttttcttttgtctactaatcattattatttattcgttttcattgctagaaatattagcctataaccggattttgtagaaccgaaatagactatatcaccttgtgcatatcctccaatatcaattgtattgaatggttttcttatgtgtttatagcacggatttgtgtaccgtgagCACGGAAACACTCCCGGATACTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCGCTCAAGTGTTGAAGGAAGTTG

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G38420.1 (Arabidopsis thaliana), 3'ss of exon 2
-------------------------atcaatatgtatcaaatctgttcctatctc-tgacca--aattttatt---cttccaaaacaagc--------acttggttttgagttttgatggttgatctgctt-gtttgcagCACGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT
                          ||  || | |||   | |  | ||   || |  | |  || || | |      || ||| |  |        |  |   | | | || |  ||  || | | |||  | |  ||||||| || |||||||||||||||   |   | || |||||||| |||||||| |||||||| ||||||||||| ||  |||| || ||||| ||  |  
gtaatatacactgaacttttcctttgtctctaagcatcctttattcttcttcttcattgctagaaacttaagtggataaccgaaatagactatcaccaatatatatatcaattgtattgaatggttttctttatatatagCACGGATTTGTGTACCGTGAGCACGGAAACACTCCCGGATACTATGATGGACGATACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCG

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G38410.3 (Arabidopsis thaliana), 3'ss of exon 2
-----------------------------------------------atcaatat--gtatcaaatctgttcctatc---tctgaccaaattttattcttccaaaacaagcacttggttttgagt---tttgatggttgatctgcttgtttgcagCACGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT
                                               |  |||||  |  |  || | | |  | |     |  |  | | | |||            | |      | |  | |   ||  ||||||    |   |||||  ||||||| || |||||||||||||||   |   | || ||||||||||||||||| |||||||| ||||||||||| ||  |||| || ||||| ||  |  
gttttcttttgtctactaatcattattatttattcgttttcattgctagaaatattagcctataaccggattttgtagaaccgaaatagactatatcaccttgtgcatatcctccaatatcaattgtattgaatggttttcttatgtgtttatagCACGGATTTGTGTACCGTGAGCACGGAAACACTCCCGGATACTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCG

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G67090.2 (Arabidopsis thaliana), 3'ss of exon 2
-------------------------------------------atcaatatgtatcaaatctgttcctatctctgaccaaattttattcttccaaaacaagcacttggttttgagttttgatggttgat--ctgcttgtttgca--gCACGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT
                                            |  || |     |||| || |   || | | |    || ||  | |    ||||| |  |    | ||   | |   |||||  |  |   | ||||| |  |||||| || |||||||||||||||   |  ||||| |||||||| |||||||| |||||||| ||||||||||| ||  |||| |||||||| ||  |  
gttggaggtaattaaacaaaatttaaacatctatataaactagctagatcttaggaaaatttggtttaatatatta--ggatcttgatttatataaacatgttcaaaatgtt--atctgagtggtttgtaacatgtggtttgtatagCACGGATTTGTGTACCGTGAGCACGGTAACTCACCCGGATACTATGATGGACGGTACTGGACAATGTGGAAGCTTCCCTTGTTCGGTTGCACCGACTCCG

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G67090.1 (Arabidopsis thaliana), 3'ss of exon 2
------------------------------------atcaatatgtatcaaatctgttcctatctctgaccaaattttattcttccaaaacaagcacttggttttgagttttgatggttgat--ctgcttgtttgca--gCACGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT
                                     |  || |     |||| || |   || | | |    || ||  | |    ||||| |  |    | ||   | |   |||||  |  |   | ||||| |  |||||| || |||||||||||||||   |  ||||| |||||||| |||||||| |||||||| ||||||||||| ||  |||| |||||||| ||  |  
gtaattaaacaaaatttaaacatctatataaactagctagatcttaggaaaatttggtttaatatatta--ggatcttgatttatataaacatgttcaaaatgtt--atctgagtggtttgtaacatgtggtttgtatagCACGGATTTGTGTACCGTGAGCACGGTAACTCACCCGGATACTATGATGGACGGTACTGGACAATGTGGAAGCTTCCCTTGTTCGGTTGCACCGACTCCG

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv17s0000g03690.t01 (Vitis vinifera), 3'ss of exon 2
atcaatatgtatcaaatctgttcctatctctgaccaaattttattcttccaaaacaagcacttggttttgagt----tttgatggttgatctgcttgtt--tgcagCACGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT
           | |  |   |     | ||||   |  |||||  ||   |  | |     ||  |||  ||     || |||  ||  | ||  |||   ||||| ||   | |    || | ||||||||||| || |||||||||||||| ||| | ||||||||||||||||||||||| ||||| || ||||||||  |  
----------gttattttcatgaacttttctgtgaagcttttaaactaggattatagaggtttaatttgtagaataattggattattattttgtatgtgaatgcagTACCCATACCCCCACAGAGAGCACAACAGATCGCCAGGATACTACGACGGAAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACTGACTCAG

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: EDO96903 (Chlamydomonas reinhardtii), 3'ss of exon 3
-atcaatatgtatcaaatctgttcctatctctgaccaaattttattcttccaaaacaagcacttggttttgagttttgatggttgatctgcttgtttgcagCACGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGAC-GCTACTGGACCATGTGGAAGCTGCCT---ATGTTTGGTTGCACTGATGCTT-----
 |   | | | |      |   | | |||| ||       | |   ||    |   || | |||     |    |||          | |   |   |||||     | ||   ||||  |    | || ||    ||    | | | | | | ||  |    |||||  |  |||||     ||  | |  |||||  | || |     
cacggaaaagcaaggggcccaattccatctttggtggttctgtgcgctggtgactgaacctcttctccctcccattt---------cccgtgcgcccgcagctgtactaCGACAACCGCTACTGGACCATGTGGA-AGCTGCCCATGTTCGGCTGCCGCGACCCCATGCAGGTGCTGCGCGAGATCGTCGCCTGCACCAAGGCCTTCCCC

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: EDO96901 (Chlamydomonas reinhardtii), 3'ss of exon 3
atcaatatgtatcaaatctgttcctatctctgaccaaattttattcttccaaaacaagcacttggttttgagttttgatggttgatctgcttgtttgcagCACGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT------------------------------------
                                       || |       ||| ||||        ||  |  |||| |||||        || |  | | ||   |||     ||     | |    |  | |     ||||||||    |||||||||||||||||||||||||| ||||| || |||   ||  |                                      
------------------------------------tgcttcagcacggaaaagcaaggggcccaattccatctttggtggttctgtgcgctggtgactgaacctcttctccctcccatttcccgtgcgcccgcagCTGTACTACGACAACCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCCGCGACCCCATGCAGGTGCTGCGCGAGATCGTCGCCTGCACCAAGG

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S227_129V6.1 (Physcomitrella patens), 3'ss of exon 1
atcaatatgtatcaaatctgttcctatctctgaccaaattttattcttccaaaacaagcacttggttttgagtttt--gatggttgatctgcttgtttgcagCAC---GGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT
   | |  ||   | | |   |  |     ||    || | |   | |   | |   | | | ||   ||  ||||  ||     | | || |||   |||| ||        |||||  || |   |||||   || ||||| ||||||||||| || |||||||| |||||||||||||| ||||| || |||   ||     
gcgagtgagtcggagagcgaattgtggaaatg-tagaaatgtgggcgtgggagagtggtagtcggcgatgcattttctgacaaccg-tgtggttgggagcagAACTCGAACGGCGTGTCTCGCGTCAACAACTCATCGCCAGGGTACTACGATGGTCGGTACTGGACGATGTGGAAGCTGCCGATGTTAGGATGCCAGGACT---

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S66_47V6.1 (Physcomitrella patens), 3'ss of exon 1
--------------------------------------------------------------------------------------------atcaatatg--tatcaaatctgttcctatctctgaccaaattttattcttccaaaacaagcacttggttttgagttttgatg-----gttgatctgcttgtttgcagCAC---GGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT
                                                                                            |  ||   |  |||  |      |  | ||  ||  |    |   |     |||  |  ||| |||| | |  ||  |||||     || ||  ||  ||   |||| ||         ||||  || |   |||||   || ||||||||||||||||| || ||||||||||||||||||||||| ||||| || |||   ||     
gtaagatttcggtttcgaaattgtgggttccagaacttagacgagaagccactgtctcaattcgtgtcaattttgatgaatgatgtggtgagaggaactcggatattgagagcaatgttgtcgatgtgcgtgatccgtga--gcaattctggcagttgggtat--gtcctgatgaggaagtggacttgtgtgagagcagAACTCGAACGGAGTGTCTCGGGCCAACAACTCATCCCCAGGATACTACGATGGTCGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCCAGGACT---

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S56_173V6.1 (Physcomitrella patens), 3'ss of exon 1
atcaatatgtatcaaatctgttcctatctctgaccaaattttattcttccaaaacaagcact-tggttttgagt---tttgatggttgatctgcttgtttgcagCACGGTTT-CGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT
     |  |  ||        |         |          ||| |     |    ||  | || |   ||||   | ||  |||   | || | |     | | ||      |||| ||| |   |||||  ||| |||||||||||||| || || |||||||| |||||||||||||| ||||| || |||   ||     
--gtgtgcgggtcggggagagtgggggggaggggggggggggattgtgtgggaggtggcggtgtgctgacgagtgggtgtgggggtgtgtgtggtggagcagAACTCGAACGGTGTGTCCCGCGTCAACAACTCGTCCCCAGGATACTACGACGGGCGGTACTGGACGATGTGGAAGCTGCCGATGTTCGGGTGCCAGGACT---

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S188_39V6.1 (Physcomitrella patens), 3'ss of exon 1
------------------------------------------------------------------------------atcaatatgtatcaaatctgttcctatctctgaccaaattttattcttccaaaacaagcacttggttttgagttttgatggttgatctgcttgtttgcagCA------CGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT
                                                                              |    |||   |  ||| |   |    |     |||    |  |   |  |        ||   |  ||||      |||  |   ||   | | || | ||       |    ||||| |||     |||||   || || || ||||||||||| ||||||||||| |||||||||||||| ||||| || |||   ||     
gtaagtttcacgaaccttgtctggtgctgcattgcattgtttgtttgatgttggcttatcatttttgtcttaatgaggagttctatcgttagaatttaagctcgccgtcctccattaatcttcagtgaaggctgtaaaccgcgaattgaccaaacatgtcttggctatctttgtgaaacagAACGCTGACGGCGTGTCCCGCACCAACAACTCATCTCCCGGGTACTACGATGGCCGCTACTGGACTATGTGGAAGCTGCCCATGTTCGGATGCCAGGACT---

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S459_10V6.1 (Physcomitrella patens), 3'ss of exon 1
--atcaatatgtatcaaatctgttcctatctctgaccaaattttattcttccaaaacaagcacttggttttgagttttgatggttgatctgct-tgtttgcagCACGGTTTCG---TGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT
    |||| || |  ||||     |  | | ||      |||   | ||   |   |        | |      |  ||| |  || | || | |    |||| |||    ||   | |  |||    |||||      ||||| ||||||||||| || ||||||||||||||||||||||| ||||| || |||   ||     
tttgcaatttgaagaaaataaaaacgcaaccctcttagcatt---tgctagaagttctgatttaagctaccatctcctgacgagtggtgtggtgtaagagcagAACGCCAACGGAGTATCTCGTACCAACAACTCCAGCCCAGGCTACTACGATGGTCGTTACTGGACCATGTGGAAGCTGCCCATGTTCGGATGCCAAGACT---

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S25_114V6.1 (Physcomitrella patens), 3'ss of exon 2
-----atcaatatgtatcaaatctgttcctatctctgaccaaattttattcttccaaaacaagcacttggttttgagttttgatggttgatctgcttgtttgcagCACGGTTTCGTGTACCGTGAGCACAAC---------AGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT
      |||  |   |      | | || | | || ||  | | |   ||    ||| ||    | |     |   || | |    ||| | || | | |  |||   || | ||||  |||     ||  |          | ||  | || ||||||||||| |||||||||||||||||||||||||| ||||| || ||||         
atgccctcagcacaaactcgg-cagctcgtgtttcggagaagagtgagtta--acaacacggagagtcttgctaatgtgtggcgcattggtgtgttgggt--cagGTTGGATCCGTGAGCCGCACCAACTTCTCCGGCGCGGGTTCCTCGGGTTACTACGATGGGCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCA---------

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S352_62V6.1 (Physcomitrella patens), 3'ss of exon 2
atcaatatgtatcaaatctgttcctatctctgaccaaatttt------attcttccaaaacaagcact-tggttttgagttttgatggttgatctgcttgtttgcagCAC---GGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT
     || ||   ||  | || ||| || || ||  || |||      ||   |   |   ||| |||   | || |     |     |||  |  || | || ||| ||         |||| ||| ||  |||||      || || ||||||||||| ||||||||||||||||||||  |||| ||||| || |||| |||     
----gtaagtgataa-ccagtgcctttcgctcactcaactttgcgaagatctgtaagatgtaaggactgcagattggcaacctctaaattgtgcgtctcgatttcagAACTCAAAAGGTGTGTCCCGGGACAACAACTCTAGCCCTGGGTACTACGATGGCCGCTACTGGACCATGTGGAAATTGCCAATGTTCGGGTGCAATGACT---

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S46_42V6.1 (Physcomitrella patens), 3'ss of exon 1
atcaatatgtatcaaatctgttcctatctctgaccaaattttattc--ttccaaaacaagcacttggttttgagttttgatggttgatctgcttgtttgcagCACGGTTTC------GTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT
     |||  |   | ||||||     ||||    |  ||  ||     |   |   |||  |||| | |    |    || |   | ||  ||| | |   ||    | |      |||  ||| ||| |||||   || ||||| ||||| || || ||||||||||||||||||||| |||| ||||| || |||   ||     
--agctatagaatcattctgtttagggctctagt-atgttaaatggaacttggagtgaagtgcttgctgtgccctacgaattgacaacct--ttgctcgttacagAACTCCAAGGGTGTGACCCGCGAGAACAACTCCTCCCCAGGGTACTATGACGGCCGCTACTGGACCATGTGGAAGTTGCCCATGTTCGGATGCCAAGACT---

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S12_231V6.1 (Physcomitrella patens), 3'ss of exon 1
-atcaatatgtatcaaatctgttcctatctctgaccaaattttattcttccaaaacaagcacttggttttgagttttgatggttgatc-tgcttgtttgcagCACGGTTTCG---TGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT
  ||  | | | |  | | ||    ||  | | |    | ||   ||      |  ||    | |        |  ||| |  ||  | || | |    ||| |||    ||   ||| |||     |||||   || ||||| ||||||||||| || |||||||||||||||||| |||| ||||| || |||   ||     
tgtcgct-tttgtagagtgtggag-tagatgttatggtaattgcctcaagaggaggaaatcgtggaaccattttcctgacgagtggccatgttggagaacagAACGCCAACGGTGTGTCCCGCACCAACAACTCATCCCCAGGGTACTACGATGGTCGTTACTGGACCATGTGGAAGTTGCCCATGTTCGGGTGCCAGGACT---

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S352_14V6.1 (Physcomitrella patens), 3'ss of exon 1
atcaatatg-tatcaaatctgttcctatctctgaccaaattttattcttccaaaacaagcacttggttttgagtt-ttgatggttgatctgcttgtttg---cagCACGGTTTCG---TGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT
  |  || | | | |    ||||  | | |  ||     ||||    |        |||    || ||||  | |  |  || ||  | || |  ||||   ||| |||    ||   ||| |||     |||||   || || |||||||||||||| |||||||||||||||||||||||||| ||||| || |||| |||     
--cgctaggctgtgacggttgtttat-tatgagaattggtttttgagtaattgggtaagt--ctgcttttaggctgcttctgattcgtatgttgttttggtacagAACGCCAACGGTGTGTCCCGCACCAACAACTCATCCCCCGGATACTACGATGGTCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCAATGACT---

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S545_4V6.1 (Physcomitrella patens), 3'ss of exon 1
atcaatatgtatcaaatctgttcctatctctgaccaaattttattcttccaaaacaagcactt-------ggttttgagttttgatggttgatctg-cttgtttgcagCACGGTTTCG---TGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT
         ||  | | | |  | | ||  || |  ||| |     ||        | || ||       |  |     |  | |||| ||   || ||  |   ||| |||    ||   |||  |||    |||||   || || || ||||| || || |||||||||||||||||||||||||| ||||| ||||||   ||     
--------ctagtagagcggagcttttcattggctgaatgtgtgagttgagggtttatcattttcttaaagcctactgatcgtaatggctggcgtggctcataaacagAACGCCAACGGTGTGTCTCGTACCAACAACTCATCCCCTGGGTACTATGACGGTCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGTTGCCAGGACT---

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S25_119V6.1 (Physcomitrella patens), 3'ss of exon 2
-------------------------------------------------------------------------------------atcaatatgtatcaaatctgttcctat---ctctgaccaaatt-------ttattcttccaaaacaagcacttggttttgagttttgatggttgatctgcttgtttg--cagCACGGTTTCGTGTACCGTGAGCACAAC---------AGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT
                                                                                           ||| || |||  | | || ||   ||| |  |||| |       |  |  |||  | |  ||    |       |       |||   ||  |  |||| |  |||   || | ||||  |||     ||  |          | ||  | || ||||||||||| |||||||||||||||||||||||||| ||||| || ||||         
gtaagtgcatgctctacttacccgccatgtgcaaggtctattctttacaatagatcatcgagcatgggctcttccctagattgactctgccatg-ataaaaattatccccatgccctcagcacaaactcggcagctcgtgtttcggagaagagtgagttaacaacacggagagtggcgcattggtgtgttgggtcagGTTGGATCCGTGAGCCGCACCAACTTCTCCGGCGCGGGTTCCTCGGGTTACTACGATGGGCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCA---------

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S251_44V6.1 (Physcomitrella patens), 3'ss of exon 1
--atcaatatgtatcaaatctgttcctatctctgaccaaattttattcttccaaaacaag-cacttggttttgagttttgatggttg-atctgcttgtttgcagCAC-GGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT
   |  || |   || | || |||       ||  |    |  | ||||   ||     | |  ||||  ||   |  | || | || ||     ||||   | | | |    ||||| |||     |||||   || || |||||||||||||| ||||||||||||||||||||| |||| ||||| || |||   ||     
cgctgcatgtagctccattccgtttggtatcctacctccctgattttctctgaatttttgtcgattggcatt--ctactaatcgctgcattcttgtgttcagAACGCCGACGGCGTGTCCCGCACCAACAACTCATCCCCCGGATACTACGATGGTCGCTACTGGACCATGTGGAAGTTGCCCATGTTCGGATGCCAGGACC---

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S109_145V6.1 (Physcomitrella patens), 3'ss of exon 1
---------------------------------------------------------------------------------------------atcaatatgtatcaaatctgttcctatctctgaccaaattttattcttccaaaacaagcacttggttttgagttttgatggttgatctgcttgtttgcagCACGGTTTCG---TGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT
                                                                                              |||| |  |    |||  |   |||  |  |    || |     ||||  | ||  | |   ||||||   || |||||  |||     |||  ||||| |||    ||   ||| |||||   | |||   || || |||||||||||||| |||||||||||||||||||||||||| ||||| || |||   ||     
gtaagctcccgctacagaactccaccctgggttctctaagtcttggtaattttattagttgtgcgtcatgcggtgtattataaggtgggctttttcaaaagatcatgaattggcgtctaggtgagttagaagtggtggcttc--atactcgta---ggtttt---ttctgatgagtgacactgttgagtgcagAACGCCAACGGTGTGTCCCGTGCCAATAACTCATCCCCCGGATACTACGATGGTCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGATGCCAGGACT---

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S204_93V6.1 (Physcomitrella patens), 3'ss of exon 2
-------atcaatatgtatcaaatctgttcctatctctgaccaaattttattcttccaaaacaagcacttggttttgagttttgatggt-tgatctgcttgtttgcagCACGGTTTCGTGT-ACCGTGAGCACAACAGGTCAC-CAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT
        |||  |   |      | | || | | || ||  | | |   ||      |   |    | |  |  || |     || || || |  |   | ||| | |   |   ||    | | |   |    | |||  | | || ||||||||||| |||||||||||||||||||||||||| ||||| || ||||         
ccatgtcctcagcacaaaatcgg-cagctcgtgtttcggagaagagtgagttgacaacacggagaatcgtactaatgtggcgcaatcgtgtgttgggtcagGTTGGATCCGTGAGCCGCACCAACTTCTCCGGCGCGGGTTCCTCGGGCTACTACGATGGGCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCA---------

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S339_15V6.1 (Physcomitrella patens), 3'ss of exon 1
--atcaatatgtatcaaatctgttcctatctctgaccaaattttattcttccaaaacaagcacttggttttgagtttt--gatg-gttgatctgcttgtttgcagCAC---GGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT
     |     |     |  |||    || |  |   |   | | |       | |   | |   ||   ||  ||||  || | |  | | ||  ||   |||| ||        |||||  || |   |||||   || ||||| ||||||||||| || |||||||| |||||||||||||| ||||| || |||   ||     
cggagagcgaattgtggaaatgtagaaatgtgggcgtaggatgtgtg-----gagagtggtaggcggcgatgcattttctgacgagcgggtgtgggtgggagcagAACTCGAACGGCGTGTCTCGCGTCAACAACTCATCGCCAGGGTACTACGATGGTCGGTACTGGACGATGTGGAAGCTGCCGATGTTCGGATGCCAGGACT---

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S161_34V6.1 (Physcomitrella patens), 3'ss of exon 2
----atcaatatg--tatcaaatctgttcctatctctgaccaaattttattcttccaaaacaagcacttggttttgagttttgatggttgatctgcttgtttgcagCA-CGGTTTCGTGTACCG---TGAGCACAACAGG-TCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT
    | || | |   ||    | |   ||      |   |||      ||     |  ||   ||| |  | | |||   ||     ||   |  | ||   | || | | ||     | |||    | |||    |||| ||  |||| ||||||||||| || ||||||||||||||||||||||| ||||| || ||||         
ggttaccagtctagatactcgaacaaatctcggtacaatccagccaacatctgagctgaatttgcattctgatgtgacaattacgcatt--ccctcctgcagGTAGGATCAGTAAGCCGCACCAACTTCAGCGGCCCAGGCTCCTCAGGCTACTACGATGGCCGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGATGCA---------

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S56_176V6.1 (Physcomitrella patens), 3'ss of exon 1
atcaatatgtatcaaatctgttcctatctctgaccaaattttattcttccaaaacaagcacttggttttgagttttgatggttgatctgcttgtt-tgcagCACGGTTT------CGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT
     |  |  ||        |         |              |             |   ||  |||    ||   || | | ||  |||  || ||||    |        |||| ||| |   |||||  ||| |||||||||||||| || || |||||||| |||||||||||||| ||||| || |||   ||     
----gtgcgggtcggggagagtgggggggaggggggggggggggattgtgtgggaggtggcggtgtgctgacgagtgggtgtgggtgtgtgtgtggtggagcagAACTCGAACGGTGTGTCCCGCGTCAACAACTCGTCCCCAGGATACTACGACGGGCGGTACTGGACGATGTGGAAGCTGCCGATGTTCGGGTGCCAGGACT---

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S161_16V6.1 (Physcomitrella patens), 3'ss of exon 2
----atcaatatg--tatcaaatctgttcctatctctgaccaaattttattcttccaaaacaagcacttggttttgagttttgatggttgatctgcttgtttgcagCA-CGGTTTCGTGTACCG---TGAGCACAACAGG-TCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT
    | || | |   ||    | |   ||      |   |||      ||     |  ||   ||| |  | | |||   ||     ||   |  | ||   | || | | ||     | |||    | |||    |||| ||  |||| ||||||||||| || ||||||||||||||||||||||| ||||| || ||||         
ggttaccagtctagatactcgaacaaatctcggtacaatccagccaacatctgagctgaatttgcattatgatgtgacaattacgcatt--ccctcctgcagGTAGGATCAGTAAGCCGCACCAACTTCAGCGGCCCAGGCTCCTCAGGCTACTACGATGGCCGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGATGCA---------

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ07320 (Selaginella moellendorffii), 3'ss of exon 2
------atcaatatgtatcaaatctgttcctatctctgaccaaattttattcttccaaaacaagcacttggttttgagttttgatggttgatctgcttgtttgcagCACGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT
        |  |    |||||| ||      || | || | | |       ||   |   | || | | |||   || | |     ||   |||   | ||||||| | || | ||||||||| ||   | ||| |   || |||| ||||||||| ||||||||||||||||  ||||| || |||||||| |||   ||| |  
gtaagctcctctcgccatcaaa-ctccattgatttttggcaagaacaagcactgaaatcgcgaggattcggt--cgaatct---ctgtctctctttctctttgcagAAAGGATACGTGTACCGCGAATGCCACAAGAGCCCGGGATGCTACGATGGCCGCTACTGGACCATGTACAAGCTCCCCATGTTTGGCTGCCAAGATTCCG

upper sequence: GLYMA19G06370.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ27478 (Selaginella moellendorffii), 3'ss of exon 2
------atcaatatgtatcaaatctgttcctatctctgaccaaattttattcttccaaaacaagcacttggttttgagttttgatggttgatctgcttgtttgcagCACGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT
        |  |    |||||| ||       | | || | | |       ||   |   | || | | |||   || | |     ||   |||   | ||||||| | || | ||||||||| ||   | ||| |   || |||| ||||||||| ||||||||||||||||  ||||| || |||||||| |||   ||| |  
gtaagctcctctcgccatcaaa-ctccattggtttttggcgagaacaagcactgaaatcgcgaggattcggt--cgaatct---ctgtctctctttctctttgcagAAAGGATACGTGTACCGCGAATGCCACAAGAGCCCGGGATGCTACGATGGCCGCTACTGGACCATGTACAAGCTCCCCATGTTTGGCTGCCAAGATTCCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23052977|gb|BU577468.1|BU577468
EST:     AATACCTTCTTAGGAAGGGATGGATTCCTTGCTTGGAATTCGAGTTGGAG                         CACGGATTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGA
genomic: AATACCTTCTTAGGAAGGGATGGATTCCTTGCTTGGAATTCGAGTTGGAGgtcaatttct ... ttgtttgcagCACGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGA
EST: gi|13480350|gb|BG509693.1|BG509693
EST:     AATACCTTCTTAGGAAGGGATGGATTCCTTGCTTGGAATTCGAGTTGGAG                         CACGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGA
genomic: AATACCTTCTTAGGAAGGGATGGATTCCTTGCTTGGAATTCGAGTTGGAGgtcaatttct ... ttgtttgcagCACGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGA
EST: gi|10235357|gb|BE804245.1|BE804245
EST:     AATACCTTCTTATGAAGGGATGGATTCCTTGCTTGGAATTCGAGTTGGAG                         CACGGTTGCGTGTTCCGTGAGCACAACAGGTCACCAGGATACTACGATGGA
genomic: AATACCTTCTTAGGAAGGGATGGATTCCTTGCTTGGAATTCGAGTTGGAGgtcaatttct ... ttgtttgcagCACGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGA
EST: gi|17964170|gb|BM270909.1|BM270909
EST:     AATACCTTCTTAGGAAGGGATGGATTCCTTGCTTGGAATTCGAGTTGGAG                         CACGGTTTCGTGTACCGTGAGCACAACATGTCACCAGGATACTACGATGGA
genomic: AATACCTTCTTAGGAAGGGATGGATTCCTTGCTTGGAATTCGAGTTGGAGgtcaatttct ... ttgtttgcagCACGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGA
EST: gi|7692976|gb|AW761075.1|AW761075
EST:     AATACCTTCTTAGGAAGGGATGGATTCCTTGCTTGGAATTCGATTTGGAG                         CACGGTTTCATGTACCGTGAGCACAACAAGTCACCAGGATACTACGATGGA
genomic: AATACCTTCTTAGGAAGGGATGGATTCCTTGCTTGGAATTCGAGTTGGAGgtcaatttct ... ttgtttgcagCACGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGA
EST: gi|10232886|gb|BE801774.1|BE801774
EST:     AATACCTTCTTAAGAAGGGATGGATTCCTTGCTTGGAATTCGAGTTGGAG                         CACGGTTTCGTGTACCGTGAGCACAACAGGTCACCATGATACTACGATGGA
genomic: AATACCTTCTTAGGAAGGGATGGATTCCTTGCTTGGAATTCGAGTTGGAGgtcaatttct ... ttgtttgcagCACGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGA
EST: gi|23733698|gb|BU765056.1|BU765056
EST:     AATACCTTCTTAGGAAGGGATGGATTCCTTGCTTGGAATTCGAGTTGGAG                         CACGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGA
genomic: AATACCTTCTTAGGAAGGGATGGATTCCTTGCTTGGAATTCGAGTTGGAGgtcaatttct ... ttgtttgcagCACGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGA
EST: gi|13125731|gb|BG316301.1|BG316301
EST:     ATACCTTCTTAGGAAGGGAATG-ATTCCTTGCTTGGAATTCGAGTTGGAG                         CACGGNTTCGTGTACCGTGAGCACAATCAGGTCACCAGGATACTACCTTGG
genomic: ATACCTTCTTAGGAAGGGA-TGGATTCCTTGCTTGGAATTCGAGTTGGAGgtcaatttct ... ttgtttgcagCACGGTTTCGTGTACCGTGAGCACAA-CAGGTCACCAGGATACTACGATGG
EST: gi|6667765|gb|AW279216.1|AW279216
EST:     AATACCTTCTTAGGAAGGGATGGATTCCTTGCTTGGAATTCGAGTTGGAG                         CACAGTTTCGTGTACCGTGAGCACAACAAGTCACCAGGATACTACGATGGA
genomic: AATACCTTCTTAGGAAGGGATGGATTCCTTGCTTGGAATTCGAGTTGGAGgtcaatttct ... ttgtttgcagCACGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGA
EST: gi|11414032|gb|BF425972.1|BF425972
EST:     AATACCTTCTTAGGAAGGGATGGATTCCTTGCTTGGAATTCGAGTTGGAG                         CACGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGA
genomic: AATACCTTCTTAGGAAGGGATGGATTCCTTGCTTGGAATTCGAGTTGGAGgtcaatttct ... ttgtttgcagCACGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttccaaaacaagcacttggttttgagttttgatggttgatctgcttgtttgcagCACGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT
                                        tctgctt  CT-rich tract
     aaaacaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atcaatatgtatcaaatctgttcctatctctgaccaaattttattcttccaaaacaagcacttggttttgagttttgatggttgatctgcttgtttgcagCACGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - -ctgttcc
- - - - - - - - - - - - - - -ctgacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - caagcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatggtt