Sequence
atgc intronic sequence ATGC exonic sequence...ctgaccaaattttattcttccaaaacaagcacttggttttgagttttgatggttgatctgtttgtttgcagcacggtttcgtgtaccgtgagcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
Basic information
species | Glycine max |
transcript | GLYMA19G06340.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os12g19381.1 (Oryza sativa), 3'ss of exon 2
ctgaccaaattttattcttccaaaacaagcacttggttttgagttttgatggttgatctgtttgtttgcagcacggtttcgtgtaccgtgagcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT----------------------------------------------------------------------------
||||| ||||||||| || ||||||| || || ||||| ||||| | ||||||||||||||||||||||||||||| || ||||||||||| | |||||| | |||||||| | |||||
----------------------------------------------------------------------------gttcgtctaccgtgagaaccacaggtctcctgggtactatgatggcaggtactggaccatgtggaagctgcctatgttcggatgcactgatgccacccagGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCATATCCAGATGCATTTGTTCGCATCATCGGCTTCGACAACGTCAGGCAGGTGCAGTTGATTAGCTTCA
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: AT5G38430.1 (Arabidopsis thaliana), 3'ss of exon 3
-------------------------------------------------------------------------------------------------ctgaccaaattttattcttccaaaacaagcacttggttttgagt---tttgatggttgatctgtttgtttgcagcacggtttcgtgtaccgtgagcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
| | | | | ||| | | | | | | || |||||| | | ||||| ||||||| || ||||||||||||||| | | || ||||||||||||||||| |||||||| ||||||||||| || |||| || ||||| || |
gtaatatacacaaaacttttcctttgtctactaatcattattatttttttcgttttcattgctagaaatattagcctataaccggattttttagaaccgaaatagactatatcaccttgtgcatatcctccaatatcaattgtattgaatggttttcttatgtgtttatagCACGGATTTGTGTACCGTGAGCACGGAAACACTCCCGGATACTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCG-----------------------------
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: AT5G38410.1 (Arabidopsis thaliana), 3'ss of exon 2
------------------------------------------------------------------------------------------------ctgaccaaattttattcttccaaaacaagcacttggttttgagt---tttgatggttgatctgtttgtttgcagcacggtttcgtgtaccgtgagcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
| | | | | ||| | | | | | | || |||||| | | ||||| ||||||| || ||||||||||||||| | | || ||||||||||||||||| |||||||| ||||||||||| || |||| || ||||| || |
gtaataaacacaaaagttttcttttgtctactaatcattattatttattcgttttcattgctagaaatattagcctataaccggattttgtagaaccgaaatagactatatcaccttgtgcatatcctccaatatcaattgtattgaatggttttcttatgtgtttatagCACGGATTTGTGTACCGTGAGCACGGAAACACTCCCGGATACTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCG-----------------------------
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: AT5G38410.2 (Arabidopsis thaliana), 3'ss of exon 2
------------------------------------------------------------------------------------------------ctgaccaaattttattcttccaaaacaagcacttggttttgagt---tttgatggttgatctgtttgtttgcagcacggtttcgtgtaccgtgagcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
| | | | | ||| | | | | | | || |||||| | | ||||| ||||||| || ||||||||||||||| | | || ||||||||||||||||| |||||||| ||||||||||| || |||| || ||||| || | |||| ||||||||||| ||
gtaataaacacaaaagttttcttttgtctactaatcattattatttattcgttttcattgctagaaatattagcctataaccggattttgtagaaccgaaatagactatatcaccttgtgcatatcctccaatatcaattgtattgaatggttttcttatgtgtttatagcacggatttgtgtaccgtgagCACGGAAACACTCCCGGATACTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCGCTCAAGTGTTGAAGGAAGTTG--------
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: AT5G38420.1 (Arabidopsis thaliana), 3'ss of exon 2
---------------------------------------------------------------------------ctgaccaaattttattctt-ccaaaacaagcacttggttttgagttttgatggttgatctgtttgtttgcagcacggtttcgtgtaccgtgagcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
| ||| || | | | | |||| | | | | || | || ||||| | | ||| | | ||||||| || ||||||||||||||| | | || |||||||| |||||||| |||||||| ||||||||||| || |||| || ||||| || |
gtaatatacactgaacttttcctttgtctctaagcatcctttattcttcttcttcattgctagaaacttaagtggataaccgaaatagactatcaccaatatatata-tcaattgta---ttgaatggt---tttctttatatatagCACGGATTTGTGTACCGTGAGCACGGAAACACTCCCGGATACTATGATGGACGATACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCG-----------------------------
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: AT5G38410.3 (Arabidopsis thaliana), 3'ss of exon 2
---------------------------------------------------------------------------------ctgaccaaattttattcttccaaaacaagcacttggttttgagt---tttgatggttgatctgtttgtttgcagcacggtttcgtgtaccgtgagcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
| | | | | ||| | | | | | | || |||||| | | ||||| ||||||| || ||||||||||||||| | | || ||||||||||||||||| |||||||| ||||||||||| || |||| || ||||| || |
gttttcttttgtctactaatcattattatttattcgttttcattgctagaaatattagcctataaccggattttgtagaaccgaaatagactatatcaccttgtgcatatcctccaatatcaattgtattgaatggttttcttatgtgtttatagCACGGATTTGTGTACCGTGAGCACGGAAACACTCCCGGATACTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCG-----------------------------
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: AT1G67090.2 (Arabidopsis thaliana), 3'ss of exon 2
----------------------------------------------------------------------ctgaccaaattttattcttccaaaacaagcacttggttttgagttttgatggttgat--ctgtttgtttgca--gcacggtttcgtgtaccgtgagcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
| || || | | ||||| | | | || | | ||||| | | | ||||| | |||||| || ||||||||||||||| | ||||| |||||||| |||||||| |||||||| ||||||||||| || |||| |||||||| || |
gttggaggtaattaaacaaaatttaaacatctatataaactagctagatcttaggaaaatttggtttaatatattaggatcttgatttatataaacatgttcaaaatgtta--tctgagtggtttgtaacatgtggtttgtatagCACGGATTTGTGTACCGTGAGCACGGTAACTCACCCGGATACTATGATGGACGGTACTGGACAATGTGGAAGCTTCCCTTGTTCGGTTGCACCGACTCCG-----------------------------
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: AT1G67090.1 (Arabidopsis thaliana), 3'ss of exon 2
---------------------------------------------------------------ctgaccaaattttattcttccaaaacaagcacttggttttgagttttgatggttgat--ctgtttgtttgca--gcacggtttcgtgtaccgtgagcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
| || || | | ||||| | | | || | | ||||| | | | ||||| | |||||| || ||||||||||||||| | ||||| |||||||| |||||||| |||||||| ||||||||||| || |||| |||||||| || |
gtaattaaacaaaatttaaacatctatataaactagctagatcttaggaaaatttggtttaatatattaggatcttgatttatataaacatgttcaaaatgtta--tctgagtggtttgtaacatgtggtttgtatagCACGGATTTGTGTACCGTGAGCACGGTAACTCACCCGGATACTATGATGGACGGTACTGGACAATGTGGAAGCTTCCCTTGTTCGGTTGCACCGACTCCG-----------------------------
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: Vv17s0000g03690.t01 (Vitis vinifera), 3'ss of exon 2
-------------------ctgaccaaattttattcttccaaaacaagcacttggttttgagt----tttgatggttgatctgtttgtt--tgcagcacggtttcgtgtaccgtgagcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
||| | ||||| || | | | || ||| || || ||| || | ||| ||| ||||| || | | || | ||||||||||| || |||||||||||||| ||| | ||||||||||||||||||||||| ||||| || |||||||| |||||
gttattttcatgaacttttctgtgaagcttttaaactaggattatagaggtttaatttgtagaataattggattattattttgtatgtgaatgcagTACCCATACCCCCACAGAGAGCACAACAGATCGCCAGGATACTACGACGGAAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACTGA-----CTCAG------------------------
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: EDO96903 (Chlamydomonas reinhardtii), 3'ss of exon 3
ctgaccaaattttattcttccaaaacaagcacttggttttgagttttgatggttgatctgtttgtttgcagcacggtttcgtgtaccgtgagcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT---------------
||| |||| || | |||| ||||| || | | | || ||| || | | | | | |||||||| |||||||||||||||||||||||||| ||||| || ||| || | |||||| || ||| | |
---------------cacggaaaagcaaggggcccaattccatctttggtggttctgtgcgctggtgactgaacctcttctccctcccatttcccgtgcgcccgcagctgtactaCGACAACCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCCGCGACCCCATGCAGGTGCTGCGCGAGATCGTCGCCTGCACCAAGGCCTTCCCC
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: EDO96901 (Chlamydomonas reinhardtii), 3'ss of exon 3
ctgaccaaattttattcttccaaaacaagcacttggttttgagttttgatggttgatctgtttgtttgcagcacggtttcgtgtaccgtgagcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT-------
|| | ||| |||| || | |||| ||||| || | | | || ||| || | | | | | |||||||| |||||||||||||||||||||||||| ||||| || ||| || | |||||| || ||| | |
-------tgcttcagcacggaaaagcaaggggcccaattccatctttggtggttctgtgcgctggtgactgaacctcttctccctcccatttcccgtgcgcccgcagCTGTACTACGACAACCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCCGCGACCCCATGCAGGTGCTGCGCGAGATCGTCGCCTGCACCAAGG
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: PP1S227_129V6.1 (Physcomitrella patens), 3'ss of exon 1
----------------------------ctgaccaaattttattcttccaaaacaagcacttggttttgagtttt--gatggttgatctgtttgtttgcagcac---ggtttcgtgtaccgtgagcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
|| | | | | | | | | | || || |||| || | | || ||| |||| || ||||| || | ||||| || ||||| ||||||||||| || |||||||| |||||||||||||| ||||| || ||| ||
gcgagtgagtcggagagcgaattgtggaaatgtagaaatgtgggcgtgggagagtggtagtcggcgatgcattttctgacaaccg-tgtggttgggagcagAACTCGAACGGCGTGTCTCGCGTCAACAACTCATCGCCAGGGTACTACGATGGTCGGTACTGGACGATGTGGAAGCTGCCGATGTTAGGATGCCAGGACT--------------------------------
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: PP1S66_47V6.1 (Physcomitrella patens), 3'ss of exon 1
--------------------------------------------------------------------------------------------------------------------ctgaccaaattttattcttccaaaacaa-----gcacttggttttgagttttgatg-----gttgatctgtttgtttgcagcac---ggtttcgtgtaccgtgagcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
| | | | | | | | ||| ||| |||| | || | ||||| || || ||| || |||| || |||| || | ||||| || ||||||||||||||||| || ||||||||||||||||||||||| ||||| || ||| ||
gtaagatttcggtttcgaaattgtgggttccagaacttagacgagaagccactgtctcaattcgtgtcaattttgatgaatgatgtggtgagaggaactcggatattgagagcaatgttgtcgatgtgcgtgatccgtgagcaattctggcagttgggtatg--tcctgatgaggaagtggacttgtgtgagagcagAACTCGAACGGAGTGTCTCGGGCCAACAACTCATCCCCAGGATACTACGATGGTCGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCCAGGACT--------------------------------
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: PP1S56_173V6.1 (Physcomitrella patens), 3'ss of exon 1
---------------------------ctgaccaaattttattcttccaaaacaagcact-tggttttgagt---tttgatggttgatctgtttgtttgcagcacggttt-cgtgtaccgtgagcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
| ||| | | || | || | |||| | || ||| | || | | | | || |||| ||| | ||||| ||| |||||||||||||| || || |||||||| |||||||||||||| ||||| || ||| ||
gtgtgcgggtcggggagagtgggggggaggggggggggggattgtgtgggaggtggcggtgtgctgacgagtgggtgtgggggtgtgtgtggtggagcagAACTCGAACGGTGTGTCCCGCGTCAACAACTCGTCCCCAGGATACTACGACGGGCGGTACTGGACGATGTGGAAGCTGCCGATGTTCGGGTGCCAGGACT--------------------------------
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: PP1S188_39V6.1 (Physcomitrella patens), 3'ss of exon 1
----------------------------------------------------------------------------------------------------ctgaccaaattttattcttccaaaacaagcacttggttttgagttttga-------tggttgatctgtttgtttgcagca------cggtttcgtgtaccgtgagcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
|| || | ||| || | | || | | |||| || | || | | | || | || | ||||| ||| ||||| || || || ||||||||||| ||||||||||| |||||||||||||| ||||| || ||| ||
gtaagtttcacgaaccttgtctggtgctgcattgcattgtttgtttgatgttggcttatcatttttgtcttaatgaggagttctatcgttagaatttaagctcgccgtcctccattaatcttcagtgaaggctgtaaaccgcgaattgaccaaacatgtcttggctatctttgtgaaacagAACGCTGACGGCGTGTCCCGCACCAACAACTCATCTCCCGGGTACTACGATGGCCGCTACTGGACTATGTGGAAGCTGCCCATGTTCGGATGCCAGGACT--------------------------------
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: PP1S459_10V6.1 (Physcomitrella patens), 3'ss of exon 1
--------------------------ctgaccaaattttattcttccaaaacaagcacttggttttgagttt--tgatggttgatctgtt-tgtttgcagcacggtttcg---tgtaccgtgagcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
| || | ||| || | || | | | ||| | || | || | | |||| ||| || | | ||| ||||| ||||| ||||||||||| || ||||||||||||||||||||||| ||||| || ||| ||
tttgcaatttgaagaaaataaaaacgcaaccctcttagcatttgctagaagttctgatttaagctaccatctcctgacgagtggtgtggtgtaagagcagAACGCCAACGGAGTATCTCGTACCAACAACTCCAGCCCAGGCTACTACGATGGTCGTTACTGGACCATGTGGAAGCTGCCCATGTTCGGATGCCAAGACT--------------------------------
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: PP1S25_114V6.1 (Physcomitrella patens), 3'ss of exon 2
-------------------------------ctgaccaaattttattcttccaaaacaagcacttggttttgagttttgatggttgatctgtttgtttgcagcacggtttcgtgtaccgtgagcacaac---------agGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
| || | | ||| || | | | || | | ||| | |||| | | ||| || | |||| ||| || | | || | || ||||||||||| |||||||||||||||||||||||||| ||||| || ||||
atgccctcagcacaaactcggcagctcgtgtttcggagaagagtgagttaacaacacggagagtcttgctaatgtgtggcgcattggtgtgttgggt--cagGTTGGATCCGTGAGCCGCACCAACTTCTCCGGCGCGGGTTCCTCGGGTTACTACGATGGGCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCA--------------------------------------
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: PP1S352_62V6.1 (Physcomitrella patens), 3'ss of exon 2
------------------------ctgaccaaatttt------attcttccaaaacaagcact-tggttttgagttttgatggttgatctgtttgtttgcagcac---ggtttcgtgtaccgtgagcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
|| || || ||| || | | ||| ||| | || | | ||| | | | || ||| || |||| ||| || ||||| || || ||||||||||| |||||||||||||||||||| |||| ||||| || |||| |||
gtaagtgataaccagtgcctttcgctcactcaactttgcgaagatctgtaagatgtaaggactgcagattggcaacctctaaattgtgcgtctcgatttcagAACTCAAAAGGTGTGTCCCGGGACAACAACTCTAGCCCTGGGTACTACGATGGCCGCTACTGGACCATGTGGAAATTGCCAATGTTCGGGTGCAATGACT--------------------------------
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: PP1S46_42V6.1 (Physcomitrella patens), 3'ss of exon 1
---------------ctgaccaaa-ttttattcttccaaaacaagc--------acttggtt-ttgagttttgatggttgatc-tgtttgtttgcagcacggtttc------gtgtaccgtgagcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
||| | | || | | ||| | | | || || || | | |||| |||| | | || | | ||| ||| ||| ||||| || ||||| ||||| || || ||||||||||||||||||||| |||| ||||| || ||| ||
agctatagaatcattctgtttagggctctagtatgttaaatggaacttggagtgaagtgcttgctgtgccctacgaattgacaacctttgctcgttacagAACTCCAAGGGTGTGACCCGCGAGAACAACTCCTCCCCAGGGTACTATGACGGCCGCTACTGGACCATGTGGAAGTTGCCCATGTTCGGATGCCAAGACT--------------------------------
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: PP1S12_231V6.1 (Physcomitrella patens), 3'ss of exon 1
------------------ctgaccaaattttat------tcttccaaaacaagca---cttggttttgagttt-tgatggttgatc-tgtttgtttgcagcacggtttcg---tgtaccgtgagcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
|| | || |||| | ||| | || | | ||| || ||| | || | |||| | ||| ||| || ||| ||| ||||| || ||||| ||||||||||| || |||||||||||||||||| |||| ||||| || ||| ||
tgtcgcttttgtagagtgtggagtagatgttatggtaattgcctcaagaggaggaaatcgtggaaccattttcctgacgagtggccatgttggagaacagAACGCCAACGGTGTGTCCCGCACCAACAACTCATCCCCAGGGTACTACGATGGTCGTTACTGGACCATGTGGAAGTTGCCCATGTTCGGGTGCCAGGACT--------------------------------
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: PP1S352_14V6.1 (Physcomitrella patens), 3'ss of exon 1
----------------------ctgaccaaattttattcttccaaaacaagc---acttggttttgagtt-ttgatggttgatctgtttgtttg---cagcacggtttcg---tgtaccgtgagcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
| | | | || || || || | || |||| | | | || || | |||| |||| ||| ||| || ||| ||| ||||| || || |||||||||||||| |||||||||||||||||||||||||| ||||| || |||| |||
cgctaggctgtgacggttgtttattatgagaattggtttttgagtaattgggtaagtctgcttttaggctgcttctgattcgtatgttgttttggtacagAACGCCAACGGTGTGTCCCGCACCAACAACTCATCCCCCGGATACTACGATGGTCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCAATGACT--------------------------------
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: PP1S545_4V6.1 (Physcomitrella patens), 3'ss of exon 1
---------------------ctgaccaaattttattcttccaaaacaagcactt-------ggttttgagttttgatggttgatctg-tttgtttgcagcacggtttcg---tgtaccgtgagcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
|| | ||| | || | || || | | | | |||| || || | | ||| ||| || ||| ||| ||||| || || || ||||| || || |||||||||||||||||||||||||| ||||| |||||| ||
ctagtagagcggagcttttcattggctgaatgtgtgagttgagggtttatcattttcttaaagcctactgatcgtaatggctggcgtggctcataaacagAACGCCAACGGTGTGTCTCGTACCAACAACTCATCCCCTGGGTACTATGACGGTCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGTTGCCAGGACT--------------------------------
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: PP1S25_119V6.1 (Physcomitrella patens), 3'ss of exon 2
-------------------------------------------------------------------------------------------------------------------------ctgaccaaat--tttattcttccaaaacaagcacttggttttgagttttgatggttgatctgtttgtttg--cagcacggtttcgtgtaccgtgagcacaac---------agGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
| || | | ||| | | || | | ||| || || |||| | ||| || | |||| ||| || | | || | || ||||||||||| |||||||||||||||||||||||||| ||||| || ||||
gtaagtgcatgctctacttacccgccatgtgcaaggtctattctttacaatagatcatcgagcatgggctcttccctagattgactctgccatgataaaaattatccccatgccctcagcacaaactcggcagctcgtgtttcggagaagagtgagttaacaacacggagagtggcgcattggtgtgttgggtcagGTTGGATCCGTGAGCCGCACCAACTTCTCCGGCGCGGGTTCCTCGGGTTACTACGATGGGCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCA--------------------------------------
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: PP1S251_44V6.1 (Physcomitrella patens), 3'ss of exon 1
------------------------------ctgaccaaattttattcttccaaaaca--agcacttggttttgagttttgatggttg-atctgtttgtttgcagcac-ggtttcgtgtaccgtgagcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
| ||| | || || || | |||| || | | || | || || | |||| | | | | ||||| ||| ||||| || || |||||||||||||| ||||||||||||||||||||| |||| ||||| || ||| ||
cgctgcatgtagctccattccgtttggtatcctacctccctgattttctctgaatttttgtcgattggcattc--tactaatcgctgcattcttgtgttcagAACGCCGACGGCGTGTCCCGCACCAACAACTCATCCCCCGGATACTACGATGGTCGCTACTGGACCATGTGGAAGTTGCCCATGTTCGGATGCCAGGACC--------------------------------
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: PP1S109_145V6.1 (Physcomitrella patens), 3'ss of exon 1
--------------------------------------------------------------------------------------------------------------------ctgaccaaattttattcttccaaaacaagcacttggttttgagttttgatggttgatctgtttgtttgcagcacggtttcg---tgtaccgtgagcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
|| | || | || | | | | ||| || ||||| ||| ||| ||||| ||| || ||| ||||| | ||| || || |||||||||||||| |||||||||||||||||||||||||| ||||| || ||| ||
gtaagctcccgctacagaactccaccctgggttctctaagtcttggtaattttattagttgtgcgtcatgcggtgtattataaggtgggctttttcaaaagatcatgaattggcgtctaggtgagttagaagtggtggcttcatactcgtaggtttt--ttctgatgagtgacactgttgagtgcagAACGCCAACGGTGTGTCCCGTGCCAATAACTCATCCCCCGGATACTACGATGGTCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGATGCCAGGACT--------------------------------
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: PP1S204_93V6.1 (Physcomitrella patens), 3'ss of exon 2
------------------ctgaccaaattttattcttccaaaaca---------agcacttggttttgagttttgatggttgatctgtttgtttg--cagcacggtttcgtgtaccgtgagcacaac---------agGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
| || | | || || | ||| | | | | ||| | || |||| | ||| || | |||| ||| || | | || | || ||||||||||| |||||||||||||||||||||||||| ||||| || ||||
ccatgtcctcagcacaaaatcggcagctcgtgtttcggagaagagtgagttgacaacacggagaatcgtactaatgtggcgcaatcgtgtgttgggtcagGTTGGATCCGTGAGCCGCACCAACTTCTCCGGCGCGGGTTCCTCGGGCTACTACGATGGGCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCA--------------------------------------
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: PP1S339_15V6.1 (Physcomitrella patens), 3'ss of exon 1
---------------------------ctgaccaaattttattcttccaaaacaagcacttggttttgagtttt--gatg-gttgatctgtttgtttgcagcac---ggtttcgtgtaccgtgagcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
|| | || | | | | | || || |||| || | | | | || || |||| || ||||| || | ||||| || ||||| ||||||||||| || |||||||| |||||||||||||| ||||| || ||| ||
cggagagcgaattgtggaaatgtagaaatgtgggcgtaggatgtgtggagagtg-gtaggcggcgatgcattttctgacgagcgggtgtgggtgggagcagAACTCGAACGGCGTGTCTCGCGTCAACAACTCATCGCCAGGGTACTACGATGGTCGGTACTGGACGATGTGGAAGCTGCCGATGTTCGGATGCCAGGACT--------------------------------
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: PP1S161_34V6.1 (Physcomitrella patens), 3'ss of exon 2
------------------ctgaccaaattttattcttccaaaacaagcacttggt-----tttgagttttgatggttgatctgtttgtt------tgcagcacggtttcgtgtaccgtg--------agcacaacagG-TCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
|| ||||| | | | | | || || |||| || ||||| | | || ||||| || | || ||| ||| |||| || |||| ||||||||||| || ||||||||||||||||||||||| ||||| || ||||
ggttaccagtctagatactcgaacaaatctcggtacaatccagccaacatctgagctgaatttgcattctgatgtgacaattacgcattccctcctgcagGTAGGATCAGTAAGCCGCACCAACTTCAGCGGCCCAGGCTCCTCAGGCTACTACGATGGCCGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGATGCA--------------------------------------
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: PP1S56_176V6.1 (Physcomitrella patens), 3'ss of exon 1
---------------------------ctgaccaaattttattcttccaaaacaagcacttggttttgagttttgatggttgatctgtttgtt-tgcagcacggttt------cgtgtaccgtgagcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
| ||| | | || | || ||| || || | | ||| ||| || |||| | |||| ||| | ||||| ||| |||||||||||||| || || |||||||| |||||||||||||| ||||| || ||| ||
gtgcgggtcggggagagtgggggggaggggggggggggggattgtgtgggaggtggcggt--gtgctgacgagtgggtgtgggtgtgtgtgtggtggagcagAACTCGAACGGTGTGTCCCGCGTCAACAACTCGTCCCCAGGATACTACGACGGGCGGTACTGGACGATGTGGAAGCTGCCGATGTTCGGGTGCCAGGACT--------------------------------
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: PP1S161_16V6.1 (Physcomitrella patens), 3'ss of exon 2
------------------ctgaccaaattttattcttccaaaacaagcacttggt-----tttgagttttgatggttgatctgtttgtt------tgcagcacggtttcgtgtaccgtg--------agcacaacagG-TCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
|| ||||| | | | | | || || |||| || ||||| | | || ||||| || | || ||| ||| |||| || |||| ||||||||||| || ||||||||||||||||||||||| ||||| || ||||
ggttaccagtctagatactcgaacaaatctcggtacaatccagccaacatctgagctgaatttgcattatgatgtgacaattacgcattccctcctgcagGTAGGATCAGTAAGCCGCACCAACTTCAGCGGCCCAGGCTCCTCAGGCTACTACGATGGCCGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGATGCA--------------------------------------
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: EFJ07320 (Selaginella moellendorffii), 3'ss of exon 2
------------------ctgaccaaattttattcttccaa-aacaagcacttggtttt--gagttttgatgg--------ttgatctgtttgtttgcagcacggtttcgtgtaccgtgagcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
| || ||| || | ||| |||||||||| | | || | | | | ||| | | ||||||| | || | ||||||||| || | ||| | || |||| ||||||||| |||||||||||||||| ||||| || |||||||| ||| ||| |
gtaagctcctctcgccatcaaactccattgatttttggcaagaacaagcactgaaatcgcgaggattcggtcgaatctctgtctctctttctctttgcagAAAGGATACGTGTACCGCGAATGCCACAAGAGCCCGGGATGCTACGATGGCCGCTACTGGACCATGTACAAGCTCCCCATGTTTGGCTGCCAAGATTCCG-----------------------------
upper sequence: GLYMA19G06340.3 (Glycine max), 3'ss of exon 2
lower sequence: EFJ27478 (Selaginella moellendorffii), 3'ss of exon 2
-------------ctgaccaaattttattcttcc------aaaacaagcacttggtttt--gagttttgatgg--------ttgatctgtttgtttgcagcacggtttcgtgtaccgtgagcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
| |||| | ||| | | |||||||||| | | || | | | | ||| | | ||||||| | || | ||||||||| || | ||| | || |||| ||||||||| |||||||||||||||| ||||| || |||||||| ||| ||| |
gtaagctcctctcgccatcaaactccattggtttttggcgagaacaagcactgaaatcgcgaggattcggtcgaatctctgtctctctttctctttgcagAAAGGATACGTGTACCGCGAATGCCACAAGAGCCCGGGATGCTACGATGGCCGCTACTGGACCATGTACAAGCTCCCCATGTTTGGCTGCCAAGATTCCG-----------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|120493077|gb|EH221244.1|EH221244EST: AATACCTTCTTAGGAAGGGATGGATTCCTTGCTTGGAATTCGAGTTGGAG GTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTAT
genomic: AATACCTTCTTAGGAAGGGATGGATTCCTTGCTTGGAATTCGAGTTGGAGgtcaatttct ... agcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgatggttgatctgtttgtttgcagcacggtttcgtgtaccgtgagcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
tttgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctgaccaaattttattcttccaaaacaagcacttggttttgagttttgatggttgatctgtttgtttgcagcacggtttcgtgtaccgtgagcacaacagGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
ctgacca
- - - - - - - ttcttcc
- - - - - - - - - - - - -caagcac
- - - - - - - - - - - - - - - - - ggttttg
- - - - - - - - - - - - - - - - - - - - - - - -gatggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taccgtg