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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttttattttctttcttcaccttcttcattgatttcataaaatacattaagtgcttctgttacttatgttgatctttttgtttcatgcagCTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAGCTATAATGTTAACTTATGGCTTCCCTCTTGCAATTATTGGAATGGCACTC

Basic information

species Glycine max
transcript GLYMA19G06090.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G06090.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G38660.2 (Arabidopsis thaliana), 3'ss of exon 2
gtgagttttattttctttcttcaccttcttcattgatttcataaaatacattaagtgcttctgttacttatgttgatctttttgtttcatgcagCTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAGCTATAATGTTAACTTATGGCTTCCCTCTTGCAATTATTGGAATGGCACTC
||||||||| | ||         |||||||  ||| | |      |||  | | ||       |||    | | ||||| |||        ||| || ||||||||||| ||||||| ||| || |||||| |||| ||||| ||||||||| |||| ||||| || || ||| | ||||| |||||||| || 
gtgagttttctctt--------gccttctttgttgctatg--ggtatatgtgaggt-------ttagcattatggatctgttta------acagGTATGGTTTTGGGGCCTATTTTACTATCCTTCCTGGAACTGAGTGGTCTGCTATAATGCTAACATATGGATTTCCCCTTTCTATTATCGGAATGGCTCTT

upper sequence: GLYMA19G06090.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv14s0083g00070.t01 (Vitis vinifera), 3'ss of exon 2
gtgagttttattttctttcttcaccttcttcattgatttcataaaatacattaagtgcttctgttacttatgttgatctttttgtttcatgcagCTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAGCTATAATGTTAACTTATGGCTTCCCTCTTGCAATTATTGGAATGGCACTC
|||||||||  |||| |||   |  | | | ||  | | || |   |||  | | |||||   || ||  | |||       ||  | ||  || || |||||||||||||| || ||||| || |||||||||||||||||||| |||||| |||| |||||||| ||||||||||| ||||| ||||| |||
gtgagtttt--tttccttcca-atgtacctgat--actccacagtttactgtga-tgcttacattgct-gtattg-------tgcattatatagATATGGTTTTGGGGCATACTTCAATATCCTTCCTGGATCTGAATGGTCAGCAATAATGCTAACATATGGCTTTCCTCTTGCAATAATTGGTATGGCTCTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7284959|gb|AW597446.1|AW597446
EST:     ATTGGTCTAGGTGTTGGACTCTCACTCTTGTC                         CTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAGC
genomic: ATTGGTCTAGGTGTTGGACTCTCACTCTTGTCgtgagtttta ... tttcatgcagCTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAGC
EST: gi|14206191|gb|BG839869.1|BG839869
EST:     CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTTCTTGTC                         CTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAG
genomic: CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCAC-TCTTGTCgtgagtttta ... tttcatgcagCTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAG
EST: gi|163923391|gb|EH039694.1|EH039694
EST:     CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC                         CTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAGC
genomic: CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTCgtgagtttta ... tttcatgcagCTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAGC
EST: gi|213594750|gb|DB959833.1|DB959833
EST:     CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC                         CTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAGC
genomic: CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTCgtgagtttta ... tttcatgcagCTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAGC
EST: gi|209697844|gb|BW663961.1|BW663961
EST:     CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC                         CTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAGC
genomic: CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTCgtgagtttta ... tttcatgcagCTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAGC
EST: gi|151394955|gb|EV264826.1|EV264826
EST:     CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC                         CTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAGC
genomic: CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTCgtgagtttta ... tttcatgcagCTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAGC
EST: gi|213610855|gb|DB963185.1|DB963185
EST:     CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC                         CTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAGC
genomic: CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTCgtgagtttta ... tttcatgcagCTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAGC
EST: gi|209722136|gb|BW659325.1|BW659325
EST:     CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC                         CTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAGC
genomic: CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTCgtgagtttta ... tttcatgcagCTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAGC
EST: gi|6481869|gb|AW201140.1|AW201140
EST:     CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTTTTTGTC                         CTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAG
genomic: CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTT-GTCgtgagtttta ... tttcatgcagCTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAG
EST: gi|209700887|gb|BW683104.1|BW683104
EST:     CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC                         CTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAGC
genomic: CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTCgtgagtttta ... tttcatgcagCTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAGC
EST: gi|213591872|gb|DB973423.1|DB973423
EST:     CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC                         CTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAGC
genomic: CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTCgtgagtttta ... tttcatgcagCTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAGC
EST: gi|15664219|gb|BI701590.1|BI701590
EST:     CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC                         CTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAGC
genomic: CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTCgtgagtttta ... tttcatgcagCTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAGC
EST: gi|151398964|gb|EV268835.1|EV268835
EST:     CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC                         CTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAGC
genomic: CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTCgtgagtttta ... tttcatgcagCTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAGC
EST: gi|8828022|gb|BE211752.1|BE211752
EST:     CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC                         CTACGGTTNTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCA
genomic: CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTCgtgagtttta ... tttcatgcagCTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCA
EST: gi|9259930|gb|BE348077.1|BE348077
EST:     CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC                         CTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAGC
genomic: CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTCgtgagtttta ... tttcatgcagCTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAGC
EST: gi|51338338|gb|CO982204.1|CO982204
EST:     CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC                         CTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAGC
genomic: CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTCgtgagtttta ... tttcatgcagCTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cataaaatacattaagtgcttctgttacttatgttgatctttttgtttcatgcagCTACGGTTTTGGGGCATATTTTAATATTCTCCCTGGATCTGAATGGTCAGCTATAATGTTAACTTATGGCTTCCCTCTTGCAATTATTGGAATGGCACTC
                               tgttgat  putative branch site (score: 4)
                                     tctttttgtttcat  CT-rich tract
     aatacattaa  TA-rich tract