Sequence
atgc intronic sequence ATGC exonic sequencegtaattcacattttcctgtcgttggaaacatgcattatgcaagtttatataaatagaaactagaatcatatatgatcaaaattgtgttgtgtctttttggttacagGGGCTATACAGTTTGCCAGGTCTGAAGGGTTGATACCAGCTTCTGAACCAACTCATGCCATAGCTGCAACCATTAGAGAAGCTATTCGATGTAGAGAAAC
Basic information
species | Glycine max |
transcript | GLYMA19G05630.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G05630.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv14s0083g00460.t01 (Vitis vinifera), 3'ss of exon 5
gtaattcacattttcctgtcgttggaaacatgcattatgcaagtttatataaatagaaactagaatcatatatgatcaaaattgtgttgtgtctttttggttacagGGGCTATACAGTTTGCCAGGTCTGAAGGGTTGATACCAGCTTCTGAACCAACTCATGCCATAGCTGCAACCATTAGAGAAGCTATTCGATGTAGAGAAAC
|||||| ||| | | | | | | || | | | | ||| ||| || ||| | | | | | | || ||| |||| |||||||| ||||| ||| | ||||| || |||||||| | || |||||||||||||| ||||| ||||| || |||||| | | || ||||| ||
gtaatt-----tttgcaaacaaaaaacaaaaggtttcttaaggatagaatatataccgttgggagctatagaacacaggtcaattcgtacatttactttgttgcagGTGCTATACAATTTGCTAGGACAGAAGGATTAATACCAGCACCGGAGCCAACTCATGCCATTGCTGCTACCATCAGGGAAGCTCTCCATTGCAGAGAGAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatagaaactagaatcatatatgatcaaaattgtgttgtgtctttttggttacagGGGCTATACAGTTTGCCAGGTCTGAAGGGTTGATACCAGCTTCTGAACCAACTCATGCCATAGCTGCAACCATTAGAGAAGCTATTCGATGTAGAGAAAC
tgtcttttt CT-rich tract
atatatgatcaaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaattcacattttcctgtcgttggaaacatgcattatgcaagtttatataaatagaaactagaatcatatatgatcaaaattgtgttgtgtctttttggttacagGGGCTATACAGTTTGCCAGGTCTGAAGGGTTGATACCAGCTTCTGAACCAACTCATGCCATAGCTGCAACCATTAGAGAAGCTATTCGATGTAGAGAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC