Sequence
atgc intronic sequence ATGC exonic sequencegtgtgtgtgtggacctaactctcaaaagcaattcttgactaaaagttttctataaaaaaatgataaagtaaaggcacaaatgcttgatatataaatgttacttttgctgactggatttccattccactgaagGTGGGTAGGTACAAGAGCCCTGATGAGCATCCATTCTTTCCAGATGGCCTACCTGAACCAATGTTACCACCTTTGCAGTATCCTCAG
Basic information
species | Glycine max |
transcript | GLYMA19G03290.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G03290.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os01g55870.1 (Oryza sativa), 3'ss of exon 2
gtgtgtgtgtggacctaactctcaaaagcaattcttgactaaaagttttctataaaaaaatgataaagtaaaggcacaaatgcttgatatat---aaatgttacttt-tgctgactggatttccattccactgaagGTGGGTAGGTACAAGAGCCCTGATGAGCATCCATTCTTTCCAGATGGCCTACCTGAACCAATGTTACCACCTTTGCAGTATCCTCAG
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-------------------------------------------------gtagagcagggttgtaac-tagcaatataattgttcattgtatgccaaaaattgcaaaatgttgatggttctggccatcttgtgtagGTTGGGAGATACAAGAGCCCTGATGAGCACCCATTCTTTCCGGAGGATCTGCCTGAACCACTGTTGCCACCTCTCCAGTATCCAAAG
upper sequence: GLYMA19G03290.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv14s0108g01330.t01 (Vitis vinifera), 3'ss of exon 2
gtgtgtgtgtggacctaactctcaaaagcaattcttgactaaaagttttctataaaaaaatgataaagtaaaggcacaaatgcttgatatataaatgttacttttgctgactggatttccattccactgaagGTGGGTAGGTACAAGAGCCCTGATGAGCATCCATTCTTTCCAGATGGCCTACCTGAACCAATGTTACCACCTTTGCAGTATCCTCAG
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--gtatgttacatttaaacccatcaaagaagaa--tgattgaaagaaaagaaggaagatgagagggaaagaaggga-agaggaatgatgtt--attgctggtttt-ctgatccacttttaatt--aacatagGTGGGCAGGTACAAGAGCCCTGATGAGCATCCTTTCTTCCCAGTTGAGTTGCCTGAACCAATGTTGCCACCTTTACAGTACCCAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaatgcttgatatataaatgttacttttgctgactggatttccattccactgaagGTGGGTAGGTACAAGAGCCCTGATGAGCATCCATTCTTTCCAGATGGCCTACCTGAACCAATGTTACCACCTTTGCAGTATCCTCAG
tgctgac putative branch site (score: 2)
tttccattcc putative PPT
ttgatatataaatgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgtgtgtgtggacctaactctcaaaagcaattcttgactaaaagttttctataaaaaaatgataaagtaaaggcacaaatgcttgatatataaatgttacttttgctgactggatttccattccactgaagGTGGGTAGGTACAAGAGCCCTGATGAGCATCCATTCTTTCCAGATGGCCTACCTGAACCAATGTTACCACCTTTGCAGTATCCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG