1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gctttcactcttgaccggctttgggtgggtgcatgcatgcatgcatgagagtgagtgctgtttttgtggtgattgtaacctttgttgttgtgttgcacagATGGGGATATTTTGTTTGCCACCTTCTGGGGTCATCCCTCTTCACAATCACCCTGGAATGACGGTTTTCAGTAAGCTACTTTTTGGCACTATGCACATCA
species | Glycine max |
transcript | GLYMA19G02430.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGGTGCCAAGAATCACGTACCTGCACATTTATGAGTGTGAAAAGTTCTCG ATGGGGATATTTTGTTTGCCACCTTCTGGGGTCATCCCTCTTCACAATCACEST: gi|192328382|gb|FK020093.1|FK020093
genomic: GAGTGCCAAGAATCACGTACCTGCACATTTATGAGTGTGAAAAGTTCTCGgtatttgaat ... tgttgcacagATGGGGATATTTTGTTTGCCACCTTCTGGGGTCATCCCTCTTCACAATCAC
EST: AAAAGTTCTCG ATGGGGATATTTTGTTTGCCACCTTCTGGGGTCATCCCTCTTCACAATCACEST: gi|6913835|gb|AW395365.1|AW395365
genomic: AAAAGTTCTCGgtatttgaat ... tgttgcacagATGGGGATATTTTGTTTGCCACCTTCTGGGGTCATCCCTCTTCACAATCAC
EST: GAGTGCCAAGAATCACGTACCTGCACATTTATGAGTGTGAAAAGTTCTCG ATGGGGATATTTTGTTTGCCACCTTCTGGGGTCATCCCTCTTCACAATCACEST: gi|6481438|gb|AW200709.1|AW200709
genomic: GAGTGCCAAGAATCACGTACCTGCACATTTATGAGTGTGAAAAGTTCTCGgtatttgaat ... tgttgcacagATGGGGATATTTTGTTTGCCACCTTCTGGGGTCATCCCTCTTCACAATCAC
EST: GAGTGCCAAGAATCACGTACCTGCACATTTATGAGTGTGAAAAGTTCTCG ATGGGGATATTTTGTTTGCCACCTTCTGGGGTCATCCCTCTTCACAATCAC
genomic: GAGTGCCAAGAATCACGTACCTGCACATTTATGAGTGTGAAAAGTTCTCGgtatttgaat ... tgttgcacagATGGGGATATTTTGTTTGCCACCTTCTGGGGTCATCCCTCTTCACAATCAC
tgagagtgagtgctgtttttgtggtgattgtaacctttgttgttgtgttgcacagATGGGGATATTTTGTTTGCCACCTTCTGGGGTCATCCCTCTTCACAATCACCCTGGAATGACGGTTTTCAGTAAGCTACTTTTTGGCACTATGCACATCA
ttgtaac putative branch site (score: 2)
tgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctttcactcttgaccggctttgggtgggtgcatgcatgcatgcatgagagtgagtgctgtttttgtggtgattgtaacctttgttgttgtgttgcacagATGGGGATATTTTGTTTGCCACCTTCTGGGGTCATCCCTCTTCACAATCACCCTGGAATGACGGTTTTCAGTAAGCTACTTTTTGGCACTATGCACATCA
-ctttcac
- - - - -cttgacc
- - - - - - - - - - - gggtggg
- - - - - - - - - - - - - - - gcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - gtgagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgttg