1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aactatttcagttgatgagtctattattttaatttttaattttgtctatccctctcaagatggggaatctgaaagtataatcttttgtgtacatgtgcagCTATTGAAACCTGATCCAATGGTGGTAGCCACGAAACTACTTGCTAGGAGGACATACAAGGATACTGGAAAGCAATTTAATGTGATAGCAGCTTCTTGGA
species | Glycine max |
transcript | GLYMA19G01470.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGGGACTTTCTTTGGCAGAAATATTCTCCCTGTGGATCAGNNNNNNNNG CTATTGAAACCTGATCCAATGGTGGTAGCCACGAAACTACTTGCTAGGAGGEST: gi|5058116|gb|AI736592.1|AI736592
genomic: ATGGGACTTTCTTTGGCAGAAATATTCTCCCTGTGGATCAGAAAAAAAAGgtccacaata ... acatgtgcagCTATTGAAACCTGATCCAATGGTGGTAGCCACGAAACTACTTGCTAGGAGG
EST: ATGGGACTTTCTTTGGCAGAAATATTCTCCCTGTGGATCAGNNNNNNNNG CTATTGAAACCTGATCCAATGGTGGTAGCCACGAAACTACTTGCTAGGAGGEST: gi|254347310|gb|GR853559.1|GR853559
genomic: ATGGGACTTTCTTTGGCAGAAATATTCTCCCTGTGGATCAGAAAAAAAAGgtccacaata ... acatgtgcagCTATTGAAACCTGATCCAATGGTGGTAGCCACGAAACTACTTGCTAGGAGG
EST: ATGGGACTTTCTTTGGCAGAAATATTCTCCCTGTGGATCAGNNNNNNNNG CTATTGAAACCTGATCCAATGGTGGTAGCCACGAAACTACTTGCTAGGAGGEST: gi|209698951|gb|BW652821.1|BW652821
genomic: ATGGGACTTTCTTTGGCAGAAATATTCTCCCTGTGGATCAGAAAAAAAAGgtccacaata ... acatgtgcagCTATTGAAACCTGATCCAATGGTGGTAGCCACGAAACTACTTGCTAGGAGG
EST: ATGGGACTTTCTTTGGCAGAAATATTCTCCCTGTGGATCAGNNNNNNNNG CTATTGAAACCTGATCCAATGGTGGTAGCCACGAAACTACTTGCTAGGAGG
genomic: ATGGGACTTTCTTTGGCAGAAATATTCTCCCTGTGGATCAGAAAAAAAAGgtccacaata ... acatgtgcagCTATTGAAACCTGATCCAATGGTGGTAGCCACGAAACTACTTGCTAGGAGG
ctatccctctcaagatggggaatctgaaagtataatcttttgtgtacatgtgcagCTATTGAAACCTGATCCAATGGTGGTAGCCACGAAACTACTTGCTAGGAGGACATACAAGGATACTGGAAAGCAATTTAATGTGATAGCAGCTTCTTGGA
aaagtataatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactatttcagttgatgagtctattattttaatttttaattttgtctatccctctcaagatggggaatctgaaagtataatcttttgtgtacatgtgcagCTATTGAAACCTGATCCAATGGTGGTAGCCACGAAACTACTTGCTAGGAGGACATACAAGGATACTGGAAAGCAATTTAATGTGATAGCAGCTTCTTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - gttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgtg