1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagacataagattaaagattcttgttttttatctgtagaagtgtattgtctatgtggcttgtgcatgggattttatgtttcatttcccttagggataaaaattgatttactttacgtggaatgtagAATGTGAGGCAGGCGTCTCGAACTCTCAAGCAAGGAAAGACTTTAATTGTATCCGGTTTAGCTGAATCAAAGAAAGAACATGGCGTTGAACTGCTTAGTA
species | Glycine max |
transcript | GLYMA19G01260.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGAGAGTCTCAAGATTGCTGGAGTCAAGGCACTTGACTCTGTCGAAAGA AATGTGAGGCAGGCGTCTCGAACTCTCAAGCAAGGGAAGACTTTAATTGTAEST: gi|13252462|gb|BG363373.1|BG363373
genomic: CGGAGAGTCTCAAGATTGCTGGAGTCAAGGCACTTGACTCTGTCGAAAGAgtaagacata ... tggaatgtagAATGTGAGGCAGGCGTCTCGAACTCTCAAGCAAGGAAAGACTTTAATTGTA
EST: CGGAGAGTCTCAAGATTGCTGGAGTCAAGGCACTTGACTCTGTCGAAAGA AATGTGAGGCAGGCGTCTCGAACTCTCAAGCAAGGGAAGACTTTAATTGTAEST: gi|120532483|gb|EH260616.1|EH260616
genomic: CGGAGAGTCTCAAGATTGCTGGAGTCAAGGCACTTGACTCTGTCGAAAGAgtaagacata ... tggaatgtagAATGTGAGGCAGGCGTCTCGAACTCTCAAGCAAGGAAAGACTTTAATTGTA
EST: CGGAGAGTCTCAAGATTGCTGGAGTCAAGGCACTTGACTCTGTCGAAAGA AATGTGAGGCAGGCGTCTCGAACTCTCAAGCAAGGAAAGACTTTAATTGTA
genomic: CGGAGAGTCTCAAGATTGCTGGAGTCAAGGCACTTGACTCTGTCGAAAGAgtaagacata ... tggaatgtagAATGTGAGGCAGGCGTCTCGAACTCTCAAGCAAGGAAAGACTTTAATTGTA
tttatgtttcatttcccttagggataaaaattgatttactttacgtggaatgtagAATGTGAGGCAGGCGTCTCGAACTCTCAAGCAAGGAAAGACTTTAATTGTATCCGGTTTAGCTGAATCAAAGAAAGAACATGGCGTTGAACTGCTTAGTA
aattgat putative branch site (score: 4)
ataaaaattgatttac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagacataagattaaagattcttgttttttatctgtagaagtgtattgtctatgtggcttgtgcatgggattttatgtttcatttcccttagggataaaaattgatttactttacgtggaatgtagAATGTGAGGCAGGCGTCTCGAACTCTCAAGCAAGGAAAGACTTTAATTGTATCCGGTTTAGCTGAATCAAAGAAAGAACATGGCGTTGAACTGCTTAGTA
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