1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atcagagtaatcaacactataatatcatggaatgcaaatgtgtttgtcccttcaagattttaattgcttgaactcaatggaatttgatgttctgctgcagAACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCCACCCCGCCTATGTCACCGCAGAAAGAATTAAGAAAGCCAAAAATTTGGA
species | Glycine max |
transcript | GLYMA19G01210.4 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTG AACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCCEST: gi|151405370|gb|EV275184.1|EV275184
genomic: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTGgttagtactt ... tctgctgcagAACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCC
EST: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTG AACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCCEST: gi|7233915|gb|AW569257.1|AW569257
genomic: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTGgttagtactt ... tctgctgcagAACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCC
EST: GGACCTGATTCTG AACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCCEST: gi|7589023|gb|AW704806.1|AW704806
genomic: GGACCTGATTCTGgttagtactt ... tctgctgcagAACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCC
EST: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTG AACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCCEST: gi|19936599|gb|BQ080936.1|BQ080936
genomic: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTGgttagtactt ... tctgctgcagAACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCC
EST: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTG AACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCCEST: gi|21993661|gb|BQ785189.1|BQ785189
genomic: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTGgttagtactt ... tctgctgcagAACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCC
EST: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTG AACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCCEST: gi|254344632|gb|GR855503.1|GR855503
genomic: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTGgttagtactt ... tctgctgcagAACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCC
EST: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTG AACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCCEST: gi|151400680|gb|EV270494.1|EV270494
genomic: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTGgttagtactt ... tctgctgcagAACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCC
EST: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTG AACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCCEST: gi|7233329|gb|AW568676.1|AW568676
genomic: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTGgttagtactt ... tctgctgcagAACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCC
EST: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTG AACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCCEST: gi|46492766|gb|CN472322.1|CN472322
genomic: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTGgttagtactt ... tctgctgcagAACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCC
EST: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTG AACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCCEST: gi|7233461|gb|AW568807.1|AW568807
genomic: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTGgttagtactt ... tctgctgcagAACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCC
EST: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTG AACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCCEST: gi|209713324|gb|BW684411.1|BW684411
genomic: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTGgttagtactt ... tctgctgcagAACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCC
EST: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTG AACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCCEST: gi|33389351|gb|CA852558.1|CA852558
genomic: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTGgttagtactt ... tctgctgcagAACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCC
EST: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTG AACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCCEST: gi|9986232|gb|BE660340.1|BE660340
genomic: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTGgttagtactt ... tctgctgcagAACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCC
EST: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTG AACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCCEST: gi|24205436|gb|BU964689.1|BU964689
genomic: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTGgttagtactt ... tctgctgcagAACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCC
EST: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTG AACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCCEST: gi|254340369|gb|GR858494.1|GR858494
genomic: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTGgttagtactt ... tctgctgcagAACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCC
EST: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTG AACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCCEST: gi|105632826|gb|DW246547.1|DW246547
genomic: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTGgttagtactt ... tctgctgcagAACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCC
EST: ACATTGTCACTGATGACAAAGAAGGACCTGATTCTG AACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCCEST: gi|42722674|gb|CK768573.1|CK768573
genomic: ACATTGTCACTGATGACAAAGAAGGACCTGATTCTGgttagtactt ... tctgctgcagAACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCC
EST: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTG AACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCCEST: gi|298193513|gb|HO034119.1|HO034119
genomic: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTGgttagtactt ... tctgctgcagAACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCC
EST: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTG AACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCC
genomic: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTGgttagtactt ... tctgctgcagAACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCC
gtcccttcaagattttaattgcttgaactcaatggaatttgatgttctgctgcagAACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCCACCCCGCCTATGTCACCGCAGAAAGAATTAAGAAAGCCAAAAATTTGGA
ttctgct CT-rich tract
ttcaagattttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcagagtaatcaacactataatatcatggaatgcaaatgtgtttgtcccttcaagattttaattgcttgaactcaatggaatttgatgttctgctgcagAACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCCACCCCGCCTATGTCACCGCAGAAAGAATTAAGAAAGCCAAAAATTTGGA
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