Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtacacctaactatgattaatatttaattcttcaaaactttgtttatgcatgataaccgtgattaatttttatttttttcccctatgattgagaacagGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAATATGCTAAATTGAATCCAAATTTTGTTGGATGTGTTGAAGGTGCATTGG

Basic information

species Glycine max
transcript GLYMA19G01210.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151405370|gb|EV275184.1|EV275184
EST:     CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCAT                         GCCCCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
genomic: CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCATgtaagcccaa ... ttgagaacagGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
EST: gi|209713324|gb|BW684411.1|BW684411
EST:     CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCAT                         GCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
genomic: CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCATgtaagcccaa ... ttgagaacagGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
EST: gi|38192042|gb|CF921248.1|CF921248
EST:     CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCAT                         GCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
genomic: CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCATgtaagcccaa ... ttgagaacagGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
EST: gi|7589023|gb|AW704806.1|AW704806
EST:     CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCAT                         GCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
genomic: CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCATgtaagcccaa ... ttgagaacagGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
EST: gi|151400680|gb|EV270494.1|EV270494
EST:     CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCAT                         GCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
genomic: CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCATgtaagcccaa ... ttgagaacagGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
EST: gi|9986232|gb|BE660340.1|BE660340
EST:     CGCTTCGCTCTCTAATTGCCTCATCCTCCACCTTCACCAGAAACCTTCAT                         GCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
genomic: CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCATgtaagcccaa ... ttgagaacagGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
EST: gi|254344632|gb|GR855503.1|GR855503
EST:     CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCAT                         GCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
genomic: CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCATgtaagcccaa ... ttgagaacagGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
EST: gi|21993661|gb|BQ785189.1|BQ785189
EST:     CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCAT                         GCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
genomic: CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCATgtaagcccaa ... ttgagaacagGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
EST: gi|254340369|gb|GR858494.1|GR858494
EST:     CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCAT                         GCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
genomic: CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCATgtaagcccaa ... ttgagaacagGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
EST: gi|13481183|gb|BG510526.1|BG510526
EST:     CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCAT                         GCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
genomic: CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCATgtaagcccaa ... ttgagaacagGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
EST: gi|33389351|gb|CA852558.1|CA852558
EST:     CGCTNCGCTCTNTTATTGNCTCATCCTCCACCTTCACCAGAAACCTTCAT                         GCCTCAGGTGAAAAGAAGAAGATTATGGGGGTGTTCTACAAAGGGAATGAA
genomic: CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCATgtaagcccaa ... ttgagaacagGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgcatgataaccgtgattaatttttatttttttcccctatgattgagaacagGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAATATGCTAAATTGAATCCAAATTTTGTTGGATGTGTTGAAGGTGCATTGG
         ataaccgtgattaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttgtacacctaactatgattaatatttaattcttcaaaactttgtttatgcatgataaccgtgattaatttttatttttttcccctatgattgagaacagGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAATATGCTAAATTGAATCCAAATTTTGTTGGATGTGTTGAAGGTGCATTGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG