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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttgaattgtgtggtgaaaaaggggtggttcattaatttggtggggtaatcactctaatttcaaattattaatttataaattataattatatttgtgttcacagTTTGCAGCAATCCTTCCACTGGCTGTGGCTCACACAATGGGAAACCTCTTGACCAACATTAGTCTTGGCAAGGTTGCTGTATCTTTCACTCACACAATCA

Basic information

species Glycine max
transcript GLYMA19G00270.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G00270.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv14s0066g01000.t01 (Vitis vinifera), 3'ss of exon 3
gtattttgaattgtgtggtgaaaaaggggtggttcattaatttggtggggtaatcactctaatttcaaattattaatttataaattataattatatttgtgttcacagTTTGCAGCAATCCTTCCACTGGCTGTGGCTCACACAATGGGAAACCTCTTGACCAACATTAGTCTTGGCAAGGTTGCTGTATCTTTCACTCACACAATCA
|||  |  |  |   | | | ||| ||    ||    ||||||  |    | ||   | || || |    |||  | |  |  ||| |  | |||| |    |  |||||| ||| ||||||    ||||||||| | ||||| ||||| ||||| ||||||||| | || ||  | || |||||||| || ||||||||||||||||
gtaggtcta--tacttagaggaaatggtcatgtcatataatttcttatactcata--tatagttgcgtgatat-gactgttgcattgtggtgatatatccaatttcagTTTTCAGGAATCCTAATCCTGGCTGTGACACACACCATGGGTAACCTTTTGACCAACTTAAGCCTCAGAAAAGTTGCTGTTTCATTCACTCACACAATCA

upper sequence: GLYMA19G00270.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ27053 (Selaginella moellendorffii), 3'ss of exon 2
gtattttgaattgtgtggtgaaaaaggggtggttcattaatttggtggggtaatcactctaatttcaaattattaatttataaattataattatatttgtgttcacagTTTGCAGCAATCCTTCCACTGGCTGTGGCTCACACAATGGGAAACCTCTTGACCAACATTAGTCTTGGCAAGGTTGCTGTATCTTTCACTCACACAATCA
                                         | |  |  | |||     |   |    ||     || |  || || |     | ||| |  ||  || | |  || ||| | || |||||  |||  ||||| ||||| || ||||| |||||||| || ||||| |||||||| || || || |||||||||||||
--------------------------------------gtatcgtcgtagaaattgtcgtttgtgtcgatcgagcatctcaaacttttgtccttgtttct--tcgtagGTGGTCGCGATCTTGCCGCTGGCATTGGTGCACACCATGGGGAATCTCTTTACCAACATGAGCCTTGGAAAGGTTGCGGTGTCGTTTACTCACACAATCA

upper sequence: GLYMA19G00270.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ05868 (Selaginella moellendorffii), 3'ss of exon 2
gtattttgaattgtgtggtgaaaaaggggtggttcattaatttggtggggtaatcactctaatttcaaattattaatttataaattataattatatttgtgttcacagTTTGCAGCAATCCTTCCACTGGCTGTGGCTCACACAATGGGAAACCTCTTGACCAACATTAGTCTTGGCAAGGTTGCTGTATCTTTCACTCACACAATCA
                                         | |  |  | |||     |   |  | ||     || | ||||   |   |   | | | |||  || | |  || ||| | || |||||  |||  ||||| ||||| || ||||| |||||||| || ||||| |||||||| || || || |||||||||||||
--------------------------------------gtatcgtcgtagaaattgtcgtttgtgtagatcgagcatctctaaaaattttgtccttgtttcttcgtagGTGGTCGCGATCTTGCCGCTGGCATTGGTGCACACCATGGGGAATCTCTTTACCAACATGAGCCTTGGAAAGGTTGCGGTGTCATTTACTCACACAATCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192308532|gb|FK002428.1|FK002428
EST:     TAGTCTGGACTTTGAATCTCCATCCCAGACCAAGCATCAGTGGTTCACAG                         TTTGCGGCAATCCTTCCACTGGCTGTGGCTCACACAATGGGAAACCTCTTG
genomic: TAGTCTGGACTTTGAATCTCCATCCCAGACCAAGCATCAGTGGTTCACAGgtattttgaa ... gtgttcacagTTTGCAGCAATCCTTCCACTGGCTGTGGCTCACACAATGGGAAACCTCTTG
EST: gi|6667939|gb|AW279390.1|AW279390
EST:     TAGTCTGGACTTTGAATCTCCATCCCAGACCAAGCATCAGTGGTTCACAG                         TTTGCAGCAATCCTTCCACTGGCTGTGGCTCACACAATGGGAAACCTCTTG
genomic: TAGTCTGGACTTTGAATCTCCATCCCAGACCAAGCATCAGTGGTTCACAGgtattttgaa ... gtgttcacagTTTGCAGCAATCCTTCCACTGGCTGTGGCTCACACAATGGGAAACCTCTTG
EST: gi|12688506|gb|BG154842.1|BG154842
EST:     TAGTCTGGACTTTGAATCTNCATCCCAGACCAAGCATCAGTGGTTCACAG                         TTTGCAGCAATCCTTCCACTTGCTGTGGCTCACACAATGGGAAACCTCTTG
genomic: TAGTCTGGACTTTGAATCTCCATCCCAGACCAAGCATCAGTGGTTCACAGgtattttgaa ... gtgttcacagTTTGCAGCAATCCTTCCACTGGCTGTGGCTCACACAATGGGAAACCTCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcactctaatttcaaattattaatttataaattataattatatttgtgttcacagTTTGCAGCAATCCTTCCACTGGCTGTGGCTCACACAATGGGAAACCTCTTGACCAACATTAGTCTTGGCAAGGTTGCTGTATCTTTCACTCACACAATCA
                 tattaat  putative branch site (score: 2)
      taatttcaaattatta  TA-rich tract