1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agagggaaaagaaatgcagtatttcaaaatcaattgtatatttctgtccatcatagtttgtttgggggacttatctttcatgcatttcatcttgtattagAGTTCCAAAGGGGGAAGTTATACTTCTCATGATGTTTCAAATGGAACAAATGTTGCTGGCAATGGTAATTCTTCTGTCAGAGGTCATGGGGCTTCAGATG
species | Glycine max |
transcript | GLYMA19G00260.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCGAAATGGCACTGGTGGGTCAAACGACGCTGGATCCCGGAACAATCAG AGTTCCAAAGGGGGAAGTTATACTTCTCATGA
genomic: ATCGAAATGGCACTGGTGGGTCAAACGACGCTGGATCCCGGAACAATCAGgtatttatgc ... cttgtattagAGTTCCAAAGGGGGAAGTTATACTTCTCATGA
gtccatcatagtttgtttgggggacttatctttcatgcatttcatcttgtattagAGTTCCAAAGGGGGAAGTTATACTTCTCATGATGTTTCAAATGGAACAAATGTTGCTGGCAATGGTAATTCTTCTGTCAGAGGTCATGGGGCTTCAGATG
tttcatctt CT-rich tract
ttatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agagggaaaagaaatgcagtatttcaaaatcaattgtatatttctgtccatcatagtttgtttgggggacttatctttcatgcatttcatcttgtattagAGTTCCAAAGGGGGAAGTTATACTTCTCATGATGTTTCAAATGGAACAAATGTTGCTGGCAATGGTAATTCTTCTGTCAGAGGTCATGGGGCTTCAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
-gagggaa
- - - - - gaaatgc
- - - - - - - - - - - - caaaatc
- - - - - - - - - - - - - - - - - - - - - - - -ccatcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggggga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatttc