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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggtaataatatttttcttttcttttctttgggtattgttctccgtgtgtagatattgctaataatgctgaaatcaaaaccaattgatgttttaaacacttattctgatttgtaacatcttgctttaataaattggatgttactactctaacctgctgtctgtatatgtgattgcaGATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCA

Basic information

species Glycine max
transcript GLYMA18G53700.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7233907|gb|AW569249.1|AW569249
EST:     CTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGC                         GATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCA
genomic: CTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCggtaataata ... tgtgattgcaGATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCA
EST: gi|6566822|gb|AW234454.1|AW234454
EST:     CTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGC                         GATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCA
genomic: CTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCggtaataata ... tgtgattgcaGATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCA
EST: gi|12689429|gb|BG155826.1|BG155826
EST:     CTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGC                         GATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCA
genomic: CTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCggtaataata ... tgtgattgcaGATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCA
EST: gi|213592579|gb|DB961839.1|DB961839
EST:     CTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGC                         GATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCA
genomic: CTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCggtaataata ... tgtgattgcaGATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCA
EST: gi|213593697|gb|DB971719.1|DB971719
EST:     CTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGC                         GATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCA
genomic: CTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCggtaataata ... tgtgattgcaGATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCA
EST: gi|7233788|gb|AW569131.1|AW569131
EST:     CTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGC                         GATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCA
genomic: CTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCggtaataata ... tgtgattgcaGATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCA
EST: gi|21887135|gb|BQ740348.1|BQ740348
EST:     CTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGC                         GATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCA
genomic: CTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCggtaataata ... tgtgattgcaGATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCA
EST: gi|254318817|gb|GR830381.1|GR830381
EST:     CTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGC                         GATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCA
genomic: CTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCggtaataata ... tgtgattgcaGATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCA
EST: gi|6913943|gb|AW395473.1|AW395473
EST:     CTGCTTGCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGC                         GATCTGTGAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGGTCA
genomic: CTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCggtaataata ... tgtgattgcaGATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCA
EST: gi|18721154|gb|BM523327.1|BM523327
EST:     CTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGC                         GATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCA
genomic: CTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCggtaataata ... tgtgattgcaGATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCA
EST: gi|298174178|gb|HO017514.1|HO017514
EST:     CTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGC                         GATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAGTGATCAGTTCA
genomic: CTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCggtaataata ... tgtgattgcaGATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCA
EST: gi|7924409|gb|AW830435.1|AW830435
EST:     CTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGC                         GATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCA
genomic: CTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCggtaataata ... tgtgattgcaGATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCA
EST: gi|24136489|gb|BU926999.1|BU926999
EST:     CTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGC                         GATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCA
genomic: CTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCggtaataata ... tgtgattgcaGATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCA
EST: gi|24205422|gb|BU964675.1|BU964675
EST:     CTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGC                         GATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCA
genomic: CTGCTTCCTCTTATAGCAAGTGGTGTCAGAGGCGTCACTAGCAACCCTGCggtaataata ... tgtgattgcaGATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttaataaattggatgttactactctaacctgctgtctgtatatgtgattgcaGATCTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCA
                        ctctaac  putative branch site (score: 2)
     aataaatt  TA-rich tract