1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
tttttctctgctctatctctctctttgtttttttttttttttgttgcgttggtaaattgatctgtttatgtgctgctatgtattttattttttttattttctgggatcaaagtctaataatatacgaacactgcatgagcaggTTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGCACTATTGTTCATGGCACCATTACAGG
species | Glycine max |
transcript | GLYMA18G52210.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGG TTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGCEST: gi|192328861|gb|FK023263.1|FK023263
genomic: AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGGtttttctctg ... catgagcaggTTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGC
EST: AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGG TTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGCEST: gi|31473009|gb|CD415037.1|CD415037
genomic: AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGGtttttctctg ... catgagcaggTTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGC
EST: AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGG TTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGCEST: gi|298192082|gb|HO036164.1|HO036164
genomic: AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGGtttttctctg ... catgagcaggTTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGC
EST: AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAGGCTCGTCAGG TTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGCEST: gi|23728045|gb|BU762064.1|BU762064
genomic: AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGGtttttctctg ... catgagcaggTTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGC
EST: AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGG TTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGCEST: gi|33388742|gb|CA851949.1|CA851949
genomic: AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGGtttttctctg ... catgagcaggTTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGC
EST: AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGG TTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGCEST: gi|298175521|gb|HO018232.1|HO018232
genomic: AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGGtttttctctg ... catgagcaggTTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGC
EST: AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGG TTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGCEST: gi|26047967|gb|CA784599.1|CA784599
genomic: AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGGtttttctctg ... catgagcaggTTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGC
EST: TTCGACTCACCATGAAGCTCGTCAGG TTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGCEST: gi|298174943|gb|HO014860.1|HO014860
genomic: TTCGACTCACCATGAAGCTCGTCAGGtttttctctg ... catgagcaggTTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGC
EST: AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGGAGCTCGTCAGG TTTTTAATGAAGCTGAACAATGAGACCGTGTCAATTGAGCTCAAGAATGGC
genomic: AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGGtttttctctg ... catgagcaggTTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGC
tttttttattttctgggatcaaagtctaataatatacgaacactgcatgagcaggTTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGCACTATTGTTCATGGCACCATTACAGG
gtctaat putative branch site (score: 3)
aaagtctaataatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttctctgctctatctctctctttgtttttttttttttttgttgcgttggtaaattgatctgtttatgtgctgctatgtattttattttttttattttctgggatcaaagtctaataatatacgaacactgcatgagcaggTTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGCACTATTGTTCATGGCACCATTACAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA