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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctgtatcatactaactaccctctatttattgtttattccaaacctcaatgctttactataattactaaaattcttatactaatttactctaattcatcaaaacttttctgcctacggatattcatctgctaactaacttttaagattggaaatgtagGCTTCGGAATTCCCTTATGCTCCCGGACAAGAGCCCCCTGTACCAGGAAATCTTCATTTTTTGCTCCAG

Basic information

species Glycine max
transcript GLYMA18G52160.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192313847|gb|FK008755.1|FK008755
EST:     CCTCCAAAATCATTGACTCCCATCTCCATATCTGGGCTTCTCCTCAAGAG                         GCTTCGGAATTCCCTTATGCTCCCGGACAAGAGCCCCCTGTACCAGGAAAT
genomic: CCTCCAAAATCATTGACTCCCATCTCCATATCTGGGCTTCTCCTCAAGAGgttctgtatc ... ggaaatgtagGCTTCGGAATTCCCTTATGCTCCCGGACAAGAGCCCCCTGTACCAGGAAAT
EST: gi|298193264|gb|HO033698.1|HO033698
EST:     CCTCCAAAATCATCGACTCCCATCTCCATATCTGGGCTTCTCCTCAAGAG                         GCTTCGGAATTCCCTTATGCTCCCGGACAAGAGCCCCCTGTACCAGGAAAT
genomic: CCTCCAAAATCATTGACTCCCATCTCCATATCTGGGCTTCTCCTCAAGAGgttctgtatc ... ggaaatgtagGCTTCGGAATTCCCTTATGCTCCCGGACAAGAGCCCCCTGTACCAGGAAAT
EST: gi|6501834|gb|AW203193.1|AW203193
EST:     CCTCCAAAATCATTGACTCCCATCTCCATATCTGGGCTTCTCCTCAAGAG                         GCTTCGGAATTCCCTTATGCTCCCGGACAAGAGCCCCCTGTACCAGGAAAT
genomic: CCTCCAAAATCATTGACTCCCATCTCCATATCTGGGCTTCTCCTCAAGAGgttctgtatc ... ggaaatgtagGCTTCGGAATTCCCTTATGCTCCCGGACAAGAGCCCCCTGTACCAGGAAAT
EST: gi|5676856|gb|AI937986.1|AI937986
EST:     CCTCCAAAATCATTGACTCCCATCTCCATATCTGGGCTTCTCCTCAAGAG                         GCTTCGGAATTCCCTTATGCTCCCGGACAAGAGCCCCCTGTACCAGGAAAT
genomic: CCTCCAAAATCATTGACTCCCATCTCCATATCTGGGCTTCTCCTCAAGAGgttctgtatc ... ggaaatgtagGCTTCGGAATTCCCTTATGCTCCCGGACAAGAGCCCCCTGTACCAGGAAAT
EST: gi|21677449|gb|BQ629800.1|BQ629800
EST:     CCTCCAAAATCATTGACTCCCATCTCCATATCTGGGCTTCTCCTCAAGAG                         GCTTCGGAATTCCCTTATGCTCCCGGACAAGAGCCCCCTGTACCAGGAAAT
genomic: CCTCCAAAATCATTGACTCCCATCTCCATATCTGGGCTTCTCCTCAAGAGgttctgtatc ... ggaaatgtagGCTTCGGAATTCCCTTATGCTCCCGGACAAGAGCCCCCTGTACCAGGAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttctgcctacggatattcatctgctaactaacttttaagattggaaatgtagGCTTCGGAATTCCCTTATGCTCCCGGACAAGAGCCCCCTGTACCAGGAAATCTTCATTTTTTGCTCCAG
                            aactaac  putative branch site (score: 1)
                           taactaacttttaa  TA-rich tract