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...cttgcaagacaattctcacatggctgaatcatgtacagccttctcatttcaacatttgatgtttttattcatttgaatttctttttctctgtgtatcgaaGATGGACCTTACACTCTACGACATAAAGGAATCCTCCTCTGGTAAATTTGTTCCCTGTGATCAAGAGTTTTGCAAAGAGATCAATGGGGGTCTGCTGACC
species | Glycine max |
transcript | GLYMA18G51920.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGGTGAATTGCATTCAGTGCAAAGAATGCCCCACCAGAAGCAACCTTGG TATGGACCTTACACTCTACGACATAAAGGAATCCTCCTCTGGTAAATTTGTEST: gi|213610737|gb|DB963123.1|DB963123
genomic: TGGGTGAATTGCATTCAGTGCAAAGAATGCCCCACCAGAAGCAACCTTGGtgtatgcttc ... gtgtatcgaaGATGGACCTTACACTCTACGACATAAAGGAATCCTCCTCTGGTAAATTTGT
EST: TGGGTGAATTGCATTCAGTGCAAAGAATGCCCCACCAGAAGCAACCTTGG TATGGACCTTACACTCTACGACATAAAGGAATCCTCCTCTGGCAAATTTGTEST: gi|23726643|gb|BU761321.1|BU761321
genomic: TGGGTGAATTGCATTCAGTGCAAAGAATGCCCCACCAGAAGCAACCTTGGtgtatgcttc ... gtgtatcgaaGATGGACCTTACACTCTACGACATAAAGGAATCCTCCTCTGGTAAATTTGT
EST: TTGCATTCAGTGTAAAGAATGCCCCACCAGAAGCAACCTTGG TATGGACCTTACACTCTACGACATAAAGGAATCCTCCTCTGGTAAATTTGTEST: gi|120492464|gb|EH220631.1|EH220631
genomic: TTGCATTCAGTGCAAAGAATGCCCCACCAGAAGCAACCTTGGtgtatgcttc ... gtgtatcgaaGATGGACCTTACACTCTACGACATAAAGGAATCCTCCTCTGGTAAATTTGT
EST: TGGGTGAATTGCATTCAGTGCAAAGAATGCCCCACCAGAAGCAACCTTGG TATGGACCTTACACTCTACGACATAAAGGAATCCTCCTCTGGTAAATTTGTEST: gi|209707190|gb|BW656808.1|BW656808
genomic: TGGGTGAATTGCATTCAGTGCAAAGAATGCCCCACCAGAAGCAACCTTGGtgtatgcttc ... gtgtatcgaaGATGGACCTTACACTCTACGACATAAAGGAATCCTCCTCTGGTAAATTTGT
EST: TGGGTGAATTGCATTCAGTGCAAAGAATGCCCCACCAGAAGCAACCTTGG TATGGACCTTACACTCTACGACATAAAGGAATCCTCCTCTGGTAAATTTGTEST: gi|298192972|gb|HO033417.1|HO033417
genomic: TGGGTGAATTGCATTCAGTGCAAAGAATGCCCCACCAGAAGCAACCTTGGtgtatgcttc ... gtgtatcgaaGATGGACCTTACACTCTACGACATAAAGGAATCCTCCTCTGGTAAATTTGT
EST: TGGGTGAATTGCATTCAGTGCAAAGAATGCCCCACCAGAAGCAACCTTGG TATGGACCTTACACTCTACGACATAAAGGAATCCTCCTCTGGTAAATTTGTEST: gi|298182938|gb|HO028151.1|HO028151
genomic: TGGGTGAATTGCATTCAGTGCAAAGAATGCCCCACCAGAAGCAACCTTGGtgtatgcttc ... gtgtatcgaaGATGGACCTTACACTCTACGACATAAAGGAATCCTCCTCTGGTAAATTTGT
EST: TGGGTGAATTGCATTCAGTGCAAAGAATGCCCCACCAGAAGCAACCTTGG TATGGACCTTACACTCTACGACATAAAGGAATCCTCCTCTGGTAAATTTGTEST: gi|298192897|gb|HO033331.1|HO033331
genomic: TGGGTGAATTGCATTCAGTGCAAAGAATGCCCCACCAGAAGCAACCTTGGtgtatgcttc ... gtgtatcgaaGATGGACCTTACACTCTACGACATAAAGGAATCCTCCTCTGGTAAATTTGT
EST: TGGGTGAATTGCATTCAGTGCAAAGAATGCCCCACCAGAAGCAACCTTGG TATGGACCTTACACTCTACGACATAAAGGAATCCTCCTCTGGTAAATTTGTEST: gi|213613481|gb|DB956939.1|DB956939
genomic: TGGGTGAATTGCATTCAGTGCAAAGAATGCCCCACCAGAAGCAACCTTGGtgtatgcttc ... gtgtatcgaaGATGGACCTTACACTCTACGACATAAAGGAATCCTCCTCTGGTAAATTTGT
EST: TGGGTGAATTGCATTCAGTGCAAAGAATGCCCCACCAGAAGCAACCTTGG TATGGACCTTACACTCTACGACATAEST: gi|298186811|gb|HO037444.1|HO037444
genomic: TGGGTGAATTGCATTCAGTGCAAAGAATGCCCCACCAGAAGCAACCTTGGtgtatgcttc ... gtgtatcgaaGATGGACCTTACACTCTACGACATA
EST: TGGGTGAATTGCATTCAGTGCAAAGAATGCCCCACCAGAAGCAACCTTGG TATGGACCCTACACTCTACGACATAAAGGAATCCTCCTCTGGTAAATTTGT
genomic: TGGGTGAATTGCATTCAGTGCAAAGAATGCCCCACCAGAAGCAACCTTGGtgtatgcttc ... gtgtatcgaaGATGGACCTTACACTCTACGACATAAAGGAATCCTCCTCTGGTAAATTTGT
atttcaacatttgatgtttttattcatttgaatttctttttctctgtgtatcgaaGATGGACCTTACACTCTACGACATAAAGGAATCCTCCTCTGGTAAATTTGTTCCCTGTGATCAAGAGTTTTGCAAAGAGATCAATGGGGGTCTGCTGACC
atttgat putative branch site (score: 5)
tttctttttctctgtg putative PPT
atgtttttattcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgcaagacaattctcacatggctgaatcatgtacagccttctcatttcaacatttgatgtttttattcatttgaatttctttttctctgtgtatcgaaGATGGACCTTACACTCTACGACATAAAGGAATCCTCCTCTGGTAAATTTGTTCCCTGTGATCAAGAGTTTTGCAAAGAGATCAATGGGGGTCTGCTGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- tgcaaga
- - - - - - - ctcacat
- - - - - - - - - - -ggctgaa
- - - - - - - - - - - - - - -catgtac
- - - - - - - - - - - - - - - - - - - ccttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgtt