1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttaaagtatattttagttctaaatccatttacaatatgggaactgtactccatatgtattatatataataactctttccaatctacctcaaatttcagtATGAATCAATATTCCGTAGAGGGGAAGTGCATGCGATTCCTTCATCTATACAGGGCGCAGCATCTATGACTTCTACAGCTTCACTTGATAATTCTCTATC
species | Glycine max |
transcript | GLYMA18G50950.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TAGGAACTGTATGTGTCTCAGTTGCTTTGTACAGAACTTTTTCACTATGT ATGAATCAATATTCCGTAGAGGGGAAGTGCATGCGATTCCTTCATCTATACEST: gi|9820259|gb|BE555769.1|BE555769
genomic: TAGGAACTGTATGTGTCTCAGTTGCTTTGTACAGAACTTTTTCACTATGGtatgtctcta ... aaatttcagtATGAATCAATATTCCGTAGAGGGGAAGTGCATGCGATTCCTTCATCTATAC
EST: TAGGAACTGTATGTGTCTCAGTTGCTGTG-ACAGAACTTTT-CACTATGT ATGAATCAATATTCCGTAEST: gi|58022273|gb|CX709014.1|CX709014
genomic: TAGGAACTGTATGTGTCTCAGTTGCTTTGTACAGAACTTTTTCACTATGGtatgtctcta ... aaatttcagtATGAATCAATATTCCGTA
EST: TAGGAACTGTATGTGTCTCAGTTGCTTTGTACAGAACTTTTTCACTATGT ATGAATCAATATTCNGTAGAGGGGAAGTGCATGCGATTCCTTCATCTATAC
genomic: TAGGAACTGTATGTGTCTCAGTTGCTTTGTACAGAACTTTTTCACTATGGtatgtctcta ... aaatttcagtATGAATCAATATTCCGTAGAGGGGAAGTGCATGCGATTCCTTCATCTATAC
gtactccatatgtattatatataataactctttccaatctacctcaaatttcagtATGAATCAATATTCCGTAGAGGGGAAGTGCATGCGATTCCTTCATCTATACAGGGCGCAGCATCTATGACTTCTACAGCTTCACTTGATAATTCTCTATC
taataac putative branch site (score: 1)
atatgtattatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaaagtatattttagttctaaatccatttacaatatgggaactgtactccatatgtattatatataataactctttccaatctacctcaaatttcagtATGAATCAATATTCCGTAGAGGGGAAGTGCATGCGATTCCTTCATCTATACAGGGCGCAGCATCTATGACTTCTACAGCTTCACTTGATAATTCTCTATC
- - - - - - - - - - - - -ccattta
- - - - - - - - - - - - - - - - - - - - - actgtac
- - - - - - - - - - - - - - - - - - - - - - - - - ccatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctacctc