1 5' 3' | 2 5' 3' | 3 5' 3' |
...aactttggtatttaagtcgtctactttatgaataccctaaaattttccaacaaagacttgttatgacctgataatttttcttttggttttttatgtgaagAAAATGATTCTCACAAAGCAGTACCGATGCATACACTCAGCTAGTTGTCAATGTACTAAAGGGCATTTAAGTGAAGATATGATATTCTTAGTATTTCATA
species | Glycine max |
transcript | GLYMA18G49920.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGGTTTGGAGGCTATGCCGAAAACGGGTTAAATAAGCTCGG AAAATGATTCTCACAAAGCAGTACCGATGCATACACTCAGCTAGTTGTCAAEST: gi|254323042|gb|GR839955.1|GR839955
genomic: AGGGTTTGGAGGCTATGCCGAAAACGGGTTAAATAAGCTCGGgtaaggaaaa ... ttatgtgaagAAAATGATTCTCACAAAGCAGTACCGATGCATACACTCAGCTAGTTGTCAA
EST: CGAAAACGGGTTAAATAAGCTCGG AAAATGATTCTCACAAAGCAGTACCGATGCATACACTCAGCTAGTTGTCAA
genomic: CGAAAACGGGTTAAATAAGCTCGGgtaaggaaaa ... ttatgtgaagAAAATGATTCTCACAAAGCAGTACCGATGCATACACTCAGCTAGTTGTCAA
tccaacaaagacttgttatgacctgataatttttcttttggttttttatgtgaagAAAATGATTCTCACAAAGCAGTACCGATGCATACACTCAGCTAGTTGTCAATGTACTAAAGGGCATTTAAGTGAAGATATGATATTCTTAGTATTTCATA
acctgat putative branch site (score: 4)
tttttcttttggtttt putative PPT
ataatttttcttttgg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactttggtatttaagtcgtctactttatgaataccctaaaattttccaacaaagacttgttatgacctgataatttttcttttggttttttatgtgaagAAAATGATTCTCACAAAGCAGTACCGATGCATACACTCAGCTAGTTGTCAATGTACTAAAGGGCATTTAAGTGAAGATATGATATTCTTAGTATTTCATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA