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...cttgagtttacaaaatatatgttacctcctgctcagtcttgttcattaaatatacttatcatttcttttccctcttttcttttttcaaaacatgttgcagTGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCTCACATTATTCGACTTTATGAAGTCATAGAAACTCCAACTGACATATATGTTGTCATGGA
species | Glycine max |
transcript | GLYMA18G49770.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAGATCCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAG TGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCTCACATTATTCEST: gi|27445912|gb|CA953035.1|CA953035
genomic: CAAGATCCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAGgtttatgttg ... catgttgcagTGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCTCACATTATTC
EST: CAAGATCCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAG TGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCTCACATTATTCEST: gi|254315447|gb|GR825256.1|GR825256
genomic: CAAGATCCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAGgtttatgttg ... catgttgcagTGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCTCACATTATTC
EST: CAAGATCCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAG TGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCTCACATTATTCEST: gi|192308573|gb|FK002469.1|FK002469
genomic: CAAGATCCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAGgtttatgttg ... catgttgcagTGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCTCACATTATTC
EST: CAAGATCCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAG TGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCTCACATTATTCEST: gi|193471722|gb|FK434807.1|FK434807
genomic: CAAGATCCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAGgtttatgttg ... catgttgcagTGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCTCACATTATTC
EST: ATCCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAG TGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCTCACATTATTCEST: gi|254336679|gb|GR842858.1|GR842858
genomic: ATCCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAGgtttatgttg ... catgttgcagTGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCTCACATTATTC
EST: CAAGATCCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAG TGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCTCACATTATTCEST: gi|209717385|gb|BW659061.1|BW659061
genomic: CAAGATCCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAGgtttatgttg ... catgttgcagTGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCTCACATTATTC
EST: CAAGATCCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAG TGAGAAGAGAAATCAAAATTTTAAGATTGTEST: gi|10710463|gb|BF010181.1|BF010181
genomic: CAAGATCCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAGgtttatgttg ... catgttgcagTGAGAAGAGAAATCAAAATTTTAAGATTGT
EST: CAAGATCCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAG TGAGAAGAGAAATCAAAATTTTAAGATTGATCATGCATCCTCACATGATGCEST: gi|193336070|gb|FK298054.1|FK298054
genomic: CAAGATCCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAGgtttatgttg ... catgttgcagTGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCTCACATTATTC
EST: CAAGATCCTTAACCGACGCAAGATAAAGAGCATGGAAATGGAAGAAAAAG TGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCT
genomic: CAAGATCCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAGgtttatgttg ... catgttgcagTGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCT
ttaaatatacttatcatttcttttccctcttttcttttttcaaaacatgttgcagTGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCTCACATTATTCGACTTTATGAAGTCATAGAAACTCCAACTGACATATATGTTGTCATGGA
tttcttttccctcttt CT-rich tract
ttttcttttttcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgagtttacaaaatatatgttacctcctgctcagtcttgttcattaaatatacttatcatttcttttccctcttttcttttttcaaaacatgttgcagTGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCTCACATTATTCGACTTTATGAAGTCATAGAAACTCCAACTGACATATATGTTGTCATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA