1 5' 3' | 2 5' 3' | 3 5' 3' |
...tctcatttttgggcaatttggctaacttattttgtggacaaattgtagttttagacccttttagctagacacataaacaacgcgtacaattttcttgcagCTCCCATTTTATGTAGCAGCTCAACTCACTGGAGCCATTTCTGCTTCATACACATTGCGAGAGCTGTTACGGCCATCAGATGAGATTGGGGGAACTTCAC
species | Glycine max |
transcript | GLYMA18G49410.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGCTGTTTCGCTTGCTTTTACCGCCGTGAGGCATCTTCCGTGGCCACAG CTCCCATTTTATGTAGCAGCTCAACTCACTGGAGCCATTTCTGCTTCATACEST: gi|209715044|gb|BW677087.1|BW677087
genomic: CAGCTGTTTCGCTTGCTTTTACCGCCGTGAGGCATCTTCCGTGGCCACAGgtacatttct ... tttcttgcagCTCCCATTTTATGTAGCAGCTCAACTCACTGGAGCCATTTCTGCTTCATAC
EST: CAGCTGTTTCGCTTGCTTTTACCGCCGTGAGGCATCTTCCGTGGCCACAG CTCCCATTTTATGTAGCAGCTCAACTCACTGGAGCCATTTCTGCTTCATACEST: gi|192297066|gb|FG990337.1|FG990337
genomic: CAGCTGTTTCGCTTGCTTTTACCGCCGTGAGGCATCTTCCGTGGCCACAGgtacatttct ... tttcttgcagCTCCCATTTTATGTAGCAGCTCAACTCACTGGAGCCATTTCTGCTTCATAC
EST: CAGCTGTTTCGCTTGCTTTTACCGCCGTGAGGCATCTTCCGTGGCCACAG CTCCCATTTTATGTAGCAGCTCAACTCACTGGAGCCATTTCTGCTTCATACEST: gi|31458073|gb|CD400101.1|CD400101
genomic: CAGCTGTTTCGCTTGCTTTTACCGCCGTGAGGCATCTTCCGTGGCCACAGgtacatttct ... tttcttgcagCTCCCATTTTATGTAGCAGCTCAACTCACTGGAGCCATTTCTGCTTCATAC
EST: CAGCTGTTTCGCTTGCTTTTACCGCCGTGAGGCATCTTCCGTGGCCACAG CTCCCATTTTATGTAGCAGCTCAACTCACTGGAGCCATTTCTGCTTCATACEST: gi|31461708|gb|CD403736.1|CD403736
genomic: CAGCTGTTTCGCTTGCTTTTACCGCCGTGAGGCATCTTCCGTGGCCACAGgtacatttct ... tttcttgcagCTCCCATTTTATGTAGCAGCTCAACTCACTGGAGCCATTTCTGCTTCATAC
EST: CAGCTGTTTCGCTTGCTTTTACCGCCGTGAGGCATCTTCCGTGGCCACAG CTCCCATTTTATGTAGCAGCTCAACTCACTGGAGCCATTTCTGCTTCATACEST: gi|31305944|gb|CD391147.1|CD391147
genomic: CAGCTGTTTCGCTTGCTTTTACCGCCGTGAGGCATCTTCCGTGGCCACAGgtacatttct ... tttcttgcagCTCCCATTTTATGTAGCAGCTCAACTCACTGGAGCCATTTCTGCTTCATAC
EST: CAGCTGTTTCGCTTGCTTTTACCGCCGTGAGGCATCTTCCGTGGCCACAG CTCCCATTTTATGTAGCAGCTCAACTCACTGGAGCCATTTCTGCTTCATAC
genomic: CAGCTGTTTCGCTTGCTTTTACCGCCGTGAGGCATCTTCCGTGGCCACAGgtacatttct ... tttcttgcagCTCCCATTTTATGTAGCAGCTCAACTCACTGGAGCCATTTCTGCTTCATAC
tagttttagacccttttagctagacacataaacaacgcgtacaattttcttgcagCTCCCATTTTATGTAGCAGCTCAACTCACTGGAGCCATTTCTGCTTCATACACATTGCGAGAGCTGTTACGGCCATCAGATGAGATTGGGGGAACTTCAC
ttttcttgc CT-rich tract
tacaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctcatttttgggcaatttggctaacttattttgtggacaaattgtagttttagacccttttagctagacacataaacaacgcgtacaattttcttgcagCTCCCATTTTATGTAGCAGCTCAACTCACTGGAGCCATTTCTGCTTCATACACATTGCGAGAGCTGTTACGGCCATCAGATGAGATTGGGGGAACTTCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG