1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agttataaaaaaagtcgtgtacaaattgaacttctcaattcgaaattaacatgcaaacatttgtagctggcaattatgcttattaatgcaacttttgcagATGAACATAATTAAAATGCACAAACAAATAGATTATTTTAAAGAGTACCAACAACGACTGAGTGCTCTAATTGGTGTCTCACGAACTAAACGACTCGTGA
species | Glycine max |
transcript | GLYMA18G48980.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
ttaacatgcaaacatttgtagctggcaattatgcttattaatgcaacttttgcagATGAACATAATTAAAATGCACAAACAAATAGATTATTTTAAAGAGTACCAACAACGACTGAGTGCTCTAATTGGTGTCTCACGAACTAAACGACTCGTGA
tattaat putative branch site (score: 2)
cttttgc putative PPT
aattatgcttattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttataaaaaaagtcgtgtacaaattgaacttctcaattcgaaattaacatgcaaacatttgtagctggcaattatgcttattaatgcaacttttgcagATGAACATAATTAAAATGCACAAACAAATAGATTATTTTAAAGAGTACCAACAACGACTGAGTGCTCTAATTGGTGTCTCACGAACTAAACGACTCGTGA
- - - aaaaaaa
- - - - - - - -cgtgtac
- - - - - - - - - - - - - - - - - - - - -gaaattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -caaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttaatgc