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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggttcctttccatcctacaagttaccacaatatagtacttaacatcgccttgatgttagggtttatctgagagactgagatcgaatgataagttattttactgtttgttgcaGATAATCATAGTTATCATTGTCATTTTTGCTGGAGCATTTGAGGTTGACGTTTCCAACTGGTCTCCCTTTGCTCCAAATGGTTTAAAAGCCATATTTACG

Basic information

species Glycine max
transcript GLYMA18G48860.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G48860.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv15s0021g01840.t01 (Vitis vinifera), 3'ss of exon 2
ggttcctttccatcctacaagttaccacaatatagtactta-acatcgccttgatgttagggtttatctgagagactgagatcgaatgataagttattttactgtttgttgcaGATAATCATAGTTATCATTGTCATTTTTGCTGGAGCATTTGAGGTTGACGTTTCCAACTGGTCTCCCTTTGCTCCAAATGGTTTAAAAGCCATATTTACG-
  |  ||  |  |  |     |  | |  | |||  |  || |||        ||||||   |   |         | || | || ||| |         |||  ||  ||||| || | || ||| || |||| ||  ||| ||| || ||| ||||||| ||||| ||||||||||| |||||||||||||||||  |||| ||||| ||  
--tatctagcatttatgtccatgtcaaggacataaaatctatacaaaatacaaatgttaacttgctttc----attttagtttgactgaca------cccact--ttcctgcagGTAGTTATCGTTCTCTTTGTGATCATTGTTGGTGCTTTTAAGGTTGATGTTTCTAACTGGTCTCCTTTTGCTCCAAATGGTTTTGAAGCAATATTGACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254324543|gb|GR833968.1|GR833968
EST:     CGGGGTGTTCAAGAATCGTCTGTTGTGAATTCTCTTATGACAGTGACCAA                         GATAATCATAGTTATCATTGTCATTTTTGCTGGAGCATTTGAGGTTGACGT
genomic: CGGGGTGTTCAAGAATCGTCTGTTGTGAATTCTCTTATGACAGTGACCAAggttcctttc ... gtttgttgcaGATAATCATAGTTATCATTGTCATTTTTGCTGGAGCATTTGAGGTTGACGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agggtttatctgagagactgagatcgaatgataagttattttactgtttgttgcaGATAATCATAGTTATCATTGTCATTTTTGCTGGAGCATTTGAGGTTGACGTTTCCAACTGGTCTCCCTTTGCTCCAAATGGTTTAAAAGCCATATTTACG
                          aatgataagttatttt  TA-rich tract