1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aagtagatattttacttgagcacttcttttaccctgaaagaatatttcattaaagataataataaatccttaatgttatatgtacttgatctatctgtagAGAAATTGGAAATGGATCCTGGGATTCTTGGACTAAGCCTCTATTAAAACAG
species | Glycine max |
transcript | GLYMA18G48820.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AACTTTATTAAGGAACTAAGCAAGTGGTCTGGTTCACCAGGATACTGCTT AGAAATTGGAAATGGATCCTGGGATTCTTGGACTAAGCCTCTATTAAAACAEST: gi|298167015|gb|HO010454.1|HO010454
genomic: AACTTTATTAAGGAACTAAGCAAGTGGTCTGGTTCACCAGGATACTGCTTgtacgttttt ... ctatctgtagAGAAATTGGAAATGGATCCTGGGATTCTTGGACTAAGCCTCTATTAAAACA
EST: AACTTTATTAAGGAACTAAGCAAGTGGTCTGGTTCACCAGGATACTGCTT AGAAATTGGAAATGGATCCTGGGATTCTTGGACTAAGCCTCTATTAAAACA
genomic: AACTTTATTAAGGAACTAAGCAAGTGGTCTGGTTCACCAGGATACTGCTTgtacgttttt ... ctatctgtagAGAAATTGGAAATGGATCCTGGGATTCTTGGACTAAGCCTCTATTAAAACA
ttcattaaagataataataaatccttaatgttatatgtacttgatctatctgtagAGAAATTGGAAATGGATCCTGGGATTCTTGGACTAAGCCTCTATTAAAACAG
tctatct CT-rich tract
taaagataataataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtagatattttacttgagcacttcttttaccctgaaagaatatttcattaaagataataataaatccttaatgttatatgtacttgatctatctgtagAGAAATTGGAAATGGATCCTGGGATTCTTGGACTAAGCCTCTATTAAAACAG
- - - - - - - - - -gcacttc
- - - - - - - - - - - - - - - -ccctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgtac