1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tattaattacttaaaaaagatttaatattatattttaaacgtttatttgagaataataatgtaaaaaaaaaaatgttctcggtgatttatgcatgaatagTGAGGAGAAAGCGAAAGAAGCAATTATTTACTCATATAATAAACACATCAATGGCTTGGCTGCGCTACTTGAGGAGGAAGAAGCAGCAGATATTGCAA
species | Glycine max |
transcript | GLYMA18G48530.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAAATCGCTACCCATTCTCATTATGATTTACTAGCTTCAGTCTTGGGAAG TGAGGAGAAAGCGAAAGAAGCAATTATTTACTCATATAATAAACACATCAAEST: gi|209706920|gb|BW653161.1|BW653161
genomic: GAAATCGCTACCCATTCTCATTATGATTTACTAGCTTCAGTCTTGGGAAGgtataaataa ... gcatgaatagTGAGGAGAAAGCGAAAGAAGCAATTATTTACTCATATAATAAACACATCAA
EST: GAAATCGCTACCCATTCTCATTATGATTTACTAGCTTCAGTCTTGGGAAG TGAGGAGAAAGCGAAAGAAGCAATTATTTACTCATATAATAAACACATCAAEST: gi|209727062|gb|BW680342.1|BW680342
genomic: GAAATCGCTACCCATTCTCATTATGATTTACTAGCTTCAGTCTTGGGAAGgtataaataa ... gcatgaatagTGAGGAGAAAGCGAAAGAAGCAATTATTTACTCATATAATAAACACATCAA
EST: GAAATCGCTACCCATTCTCATTATGATTTACTAGCTTCAGTCTTGGGAAG TGAGGAGAAAGCGAAAGAAGCAATTATTTACTCATATAATAAACACATCAAEST: gi|213587648|gb|DB971371.1|DB971371
genomic: GAAATCGCTACCCATTCTCATTATGATTTACTAGCTTCAGTCTTGGGAAGgtataaataa ... gcatgaatagTGAGGAGAAAGCGAAAGAAGCAATTATTTACTCATATAATAAACACATCAA
EST: GAAATCGCTACCCATTCTCATTATGATTTACTAGCTTCAGTCTTGGGAAG TGAGGAGAAAGCGAAAGAAGCAATTATTTACTCATATAATAAACACATCAAEST: gi|213613807|gb|DB961304.1|DB961304
genomic: GAAATCGCTACCCATTCTCATTATGATTTACTAGCTTCAGTCTTGGGAAGgtataaataa ... gcatgaatagTGAGGAGAAAGCGAAAGAAGCAATTATTTACTCATATAATAAACACATCAA
EST: GAAATCGCTACCCATTCTCATTATGATTTACTAGCTTCAGTCTTGGGAAG TGAGGAGAAAGCGAAAGAAGCAATTATTTACTCATATAATAAACACATCAAEST: gi|213608773|gb|DB962867.1|DB962867
genomic: GAAATCGCTACCCATTCTCATTATGATTTACTAGCTTCAGTCTTGGGAAGgtataaataa ... gcatgaatagTGAGGAGAAAGCGAAAGAAGCAATTATTTACTCATATAATAAACACATCAA
EST: GAAATCGCTACCCATTCTCATTATGATTTACTAGCTTCAGTCTTGGGAAG TGAGGAGAAAGCGAAAGAAGCAATTATTTACTCATATAATAAACACATCAA
genomic: GAAATCGCTACCCATTCTCATTATGATTTACTAGCTTCAGTCTTGGGAAGgtataaataa ... gcatgaatagTGAGGAGAAAGCGAAAGAAGCAATTATTTACTCATATAATAAACACATCAA
tttgagaataataatgtaaaaaaaaaaatgttctcggtgatttatgcatgaatagTGAGGAGAAAGCGAAAGAAGCAATTATTTACTCATATAATAAACACATCAATGGCTTGGCTGCGCTACTTGAGGAGGAAGAAGCAGCAGATATTGCAA
aataataatgtaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattaattacttaaaaaagatttaatattatattttaaacgtttatttgagaataataatgtaaaaaaaaaaatgttctcggtgatttatgcatgaatagTGAGGAGAAAGCGAAAGAAGCAATTATTTACTCATATAATAAACACATCAATGGCTTGGCTGCGCTACTTGAGGAGGAAGAAGCAGCAGATATTGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - -taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgatt