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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatttttattttaccatttggctcatgcatatttgcattccataacactttgcaatacctaggaaattgtctccaaatgaacctactgatcccaatattttaatgtgattttcagTGGTGCCGATAATTTTCAATCAAAAGATTATGAGACCAGTGCGGAACTCTTTGAAAAATCAATGCTATATATTCCATATGATGCAGAGAACAGAATACTT

Basic information

species Glycine max
transcript GLYMA18G48190.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G48190.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G48390.1 (Arabidopsis thaliana), 3'ss of exon 1
------------------------------------------------gttatttttattttaccatttggctca-tgcatatttgcattccataacactttgcaatac-ctaggaaattgtctcc--aaatgaacctactg--------atcccaatattttaatgtgattttcagTGGTGCCGATAATTTTCAATCAAAAGATTATGAGACCAGTGCGGAACTCTTTGAAAAATCAATGCTATATATTCCATATGATGCAGAGAACAGAATACTT
                                                || || ||||||  | |  || | | | ||  |  ||    |   | ||| |     |||   |  |   |||| | |   | || |  |  ||        |||    ||||||  ||   ||| ||||| | | ||| |||| |   | |||||||||||||| ||||| ||  | ||||| ||||||||||| ||||||||| |||||  ||| || ||| |  | 
gtatgtttttgccattgaactttcatctcccttggttaacattggtgtgtcatatttattgcatc--ttagttaactgagtgattcagcttggttacagtgattgataggttttgttgttgttttcttgagtgtatgtcttggggatctaatctgggtattttc-tgctgtttacagTGCTTCAGATCATTTCCGTGCTAAAGATTATGAGACAAGTGCAGAGATGTTTGAGAAATCAATGCTCTATATTCCACATGATATAGAAAATAGAGTTTTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggaaattgtctccaaatgaacctactgatcccaatattttaatgtgattttcagTGGTGCCGATAATTTTCAATCAAAAGATTATGAGACCAGTGCGGAACTCTTTGAAAAATCAATGCTATATATTCCATATGATGCAGAGAACAGAATACTT
                                                ttttc  CT-rich tract
                                 aatattttaatgtgat  TA-rich tract