1 5' 3' | 2 5' 3' | 3 5' 3' |
...gatttccatctttcagaaggatttactcaacttgatttatatcaaaatattgtgaatttgttgctgtgggtgcctaaatttcaaccattctgattggcagGCAGAGTTATGGGTAAATAATATGAGCAAAGATGCAGATGATGATAGAACAAATGCGGATGTAGAGGGTCGACCTTCTAG
species | Glycine max |
transcript | GLYMA18G46720.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAAACCGGTG-CCCCCAAATTGTTAAGTTGGACAAGGCATTGAAATTG GCAGAGTTATGGGTAAATAATATGAGCAAAGATGCAGATGATGATAGAACAEST: gi|193533324|gb|FK491086.1|FK491086
genomic: AAAACCGGTGCCCCCCAAATTGTTAAGTTGGACAAGGCATTGAAATTGgtaagcattt ... tgattggcagGCAGAGTTATGGGTAAATAATATGAGCAAAGATGCAGATGATGATAGAACA
EST: AGAAAACCGGTGCCCCCCAAATTGTTAAGTTGGACAAGGCATTGAAATTG GCAGAGTTATGGGTAAATAATATGAGCAAAGATGCAGATGATGATAGAACA
genomic: AGAAAACCGGTGCCCCCCAAATTGTTAAGTTGGACAAGGCATTGAAATTGgtaagcattt ... tgattggcagGCAGAGTTATGGGTAAATAATATGAGCAAAGATGCAGATGATGATAGAACA
aatattgtgaatttgttgctgtgggtgcctaaatttcaaccattctgattggcagGCAGAGTTATGGGTAAATAATATGAGCAAAGATGCAGATGATGATAGAACAAATGCGGATGTAGAGGGTCGACCTTCTAG
ttctgat putative branch site (score: 3)
ccattct CT-rich tract
taaatttcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatttccatctttcagaaggatttactcaacttgatttatatcaaaatattgtgaatttgttgctgtgggtgcctaaatttcaaccattctgattggcagGCAGAGTTATGGGTAAATAATATGAGCAAAGATGCAGATGATGATAGAACAAATGCGGATGTAGAGGGTCGACCTTCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- -ttccatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaccat