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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attggcaggaatgtatatcaaccattctcctatgttgtcagatatgtagaatatatcagcatgagtgtatattgtataatcgttctcttcaatttatcagGGCACAAAGAGCTTGAAATGAGTGTCACAGAAACACCAAAGAAAACCGGTGCCCCCCAAATTGTTAAGTTGGACAAGGCATTGAAATTG

Basic information

species Glycine max
transcript GLYMA18G46720.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151405453|gb|EV275267.1|EV275267
EST:     AGACTTCTTTGTATCTTCTTTCCGTCAAATTTCCCAAATTTACTTTCCGG                         GGCACAAAGAGCTTGAAATGAGTGTCACAGAAACACCAAAGAAAACCGGTG
genomic: AGACTTCTTTGTATCTTCTTTCCGTCAAATTTCCCAAATTTACTTTCCGGgtatggctcc ... aatttatcagGGCACAAAGAGCTTGAAATGAGTGTCACAGAAACACCAAAGAAAACCGGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagaatatatcagcatgagtgtatattgtataatcgttctcttcaatttatcagGGCACAAAGAGCTTGAAATGAGTGTCACAGAAACACCAAAGAAAACCGGTGCCCCCCAAATTGTTAAGTTGGACAAGGCATTGAAATTG
                                     ttctcttca  CT-rich tract
                    tgtatattgtataat  TA-rich tract