Sequence
atgc intronic sequence ATGC exonic sequence...tggcaggatggaaacagagacacttgtcttttggggggagagtgattctcataaattcagtgctaacatctattccaatttattttctatcttttttcagGGTCCCTAGGCAGGTGATTAGCAAGATAACCAGATTACAAAGGAACTTCTTATGGGGTGGTGCAGCTGATCAAAATAAGATCCCTTGGATCAAGTGGGAA
Basic information
species | Glycine max |
transcript | GLYMA18G46270.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctcataaattcagtgctaacatctattccaatttattttctatcttttttcagGGTCCCTAGGCAGGTGATTAGCAAGATAACCAGATTACAAAGGAACTTCTTATGGGGTGGTGCAGCTGATCAAAATAAGATCCCTTGGATCAAGTGGGAA
tgctaac putative branch site (score: 1)
tttattttctatcttt putative PPT
tattccaatttatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tggcaggatggaaacagagacacttgtcttttggggggagagtgattctcataaattcagtgctaacatctattccaatttattttctatcttttttcagGGTCCCTAGGCAGGTGATTAGCAAGATAACCAGATTACAAAGGAACTTCTTATGGGGTGGTGCAGCTGATCAAAATAAGATCCCTTGGATCAAGTGGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - -ggatgga
- - - - - - - - - - cacttgt
- - - - - - - - - - - - - - - -tgggggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctaac