Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaagaatttttttttctcacttgcccttttgttgttttcacttttgtggtattggttttggtgaaatttgtgagttttatgggttcattagcattaaaccttgctttggtaatgtagGTCAGTTGGGGAGGAGAACATGGACAACAACAACTTTGCCCTGTTTTTCAAGACCCGTTTTTCTCACTTTCCAACATCAG

Basic information

species Glycine max
transcript GLYMA18G46170.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27426601|gb|CA938121.1|CA938121
EST:     TTCAGCTCCAAGCCTTGTAATTTCTCGCTTAGCCTCTTCTCTTTCACAAG                         GTCAGTTGGGGAGGAGAACATGGACAACAACAACTTTGCCCTGTTTTTCAA
genomic: TTCAGCTCCAAGCCTTGTAATTTCTCGCTTAGCCTCTTCTCTTTCACAAGgttaagaatt ... ggtaatgtagGTCAGTTGGGGAGGAGAACATGGACAACAACAACTTTGCCCTGTTTTTCAA
EST: gi|192333742|gb|FK025479.1|FK025479
EST:     TTCAGCTCCAAGCCCTGTAATTTCTCGCTTAGCCTCTTCTCTTTCACAAG                         GTCAGTTGGGGAGGAGAACATGGACAACAACAACTTTGCCCTGTTTTTCAA
genomic: TTCAGCTCCAAGCCTTGTAATTTCTCGCTTAGCCTCTTCTCTTTCACAAGgttaagaatt ... ggtaatgtagGTCAGTTGGGGAGGAGAACATGGACAACAACAACTTTGCCCTGTTTTTCAA
EST: gi|192305687|gb|FG998037.1|FG998037
EST:     TTCAGCTCCAAGCCTTGTAATTTCTCGCTTAGCCTCTTCTCTTTCACAAG                         GTCAGTTGGGGAGGAGAACATGGACAACAACAACTTTGCCCTGTTTTTCAA
genomic: TTCAGCTCCAAGCCTTGTAATTTCTCGCTTAGCCTCTTCTCTTTCACAAGgttaagaatt ... ggtaatgtagGTCAGTTGGGGAGGAGAACATGGACAACAACAACTTTGCCCTGTTTTTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaatttgtgagttttatgggttcattagcattaaaccttgctttggtaatgtagGTCAGTTGGGGAGGAGAACATGGACAACAACAACTTTGCCCTGTTTTTCAAGACCCGTTTTTCTCACTTTCCAACATCAG
          agttttat  TA-rich tract