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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaggactcctttgagataccatatagtcaacttgtttcagtttagtgaaaaaagaaaacatttttttctaactattattcatagtttttctttttctttttttctctttgttggtgttgattcacacattagAGGTGTTTAGAGATGGTGAGAGGAAAGACTCAGATGAGGCGCATAGAGAACGCCACAAGCAGGCAAGTCACCTTCTCAAAGCGGCGTAATGGGTTGCTGA

Basic information

species Glycine max
transcript GLYMA18G45780.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192308610|gb|FK002506.1|FK002506
EST:     GGAAACCTCTACCACAAGAAAGCATAG-TTTTTTGGGTTAATCATACTTG                         AGGTGTTTAGAGATGGTGAGAGGAAAGACTCAGATGAGGCGCATAGAGAAC
genomic: GGAAACCTCTACCACAAGAAAGCATAGTTTTTTTGGGTTAATCATACTTGgttaggactc ... cacacattagAGGTGTTTAGAGATGGTGAGAGGAAAGACTCAGATGAGGCGCATAGAGAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcatagtttttctttttctttttttctctttgttggtgttgattcacacattagAGGTGTTTAGAGATGGTGAGAGGAAAGACTCAGATGAGGCGCATAGAGAACGCCACAAGCAGGCAAGTCACCTTCTCAAAGCGGCGTAATGGGTTGCTGA
                                     tgttgat  putative branch site (score: 4)
     agtttttctttttctt  TA-rich tract