Sequence
atgc intronic sequence ATGC exonic sequence...aaaaattgttcatgtgtttctggcttatttgtgctggttttgtttacaagtctgtatcataataatttgcactattgaagctatatgcgttgtatttacaGGACTTCTCCAGAGGACATAAAGGCTCTGAGATTGATAACTGCCATTAAAACTCCATACCTACCTGATGGTCGTTTTGATCTTGAAGCATATGATGACTT
Basic information
species | Glycine max |
transcript | GLYMA18G45380.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6913171|gb|AW394701.1|AW394701EST: GTGAAGTCCAATTTCCATCTCCCAATGCGCAGTTTTGAGTTAAAAAATA GGACTTCTCCAGAGGACATAAAGGCTCTGAGATTGATAACTGCCATTAAAA
genomic: GTGAAGTCCAATTTCCATCTCCCAATGCGCAGTTTTGAGTTAAAAAATAggttggtttg ... tgtatttacaGGACTTCTCCAGAGGACATAAAGGCTCTGAGATTGATAACTGCCATTAAAA
EST:
gi|151408385|gb|EV278193.1|EV278193EST: TGTGAAGTCCAATTTCCATCTCCCAATGCGCAGTTTTGAGTTAAAAAATA GGACTTCTCCAGAGGACATAAAGGCTCTGAGATTGATAACTGCCATTAAAA
genomic: TGTGAAGTCCAATTTCCATCTCCCAATGCGCAGTTTTGAGTTAAAAAATAggttggtttg ... tgtatttacaGGACTTCTCCAGAGGACATAAAGGCTCTGAGATTGATAACTGCCATTAAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acaagtctgtatcataataatttgcactattgaagctatatgcgttgtatttacaGGACTTCTCCAGAGGACATAAAGGCTCTGAGATTGATAACTGCCATTAAAACTCCATACCTACCTGATGGTCGTTTTGATCTTGAAGCATATGATGACTT
tgtatcataataattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaaaattgttcatgtgtttctggcttatttgtgctggttttgtttacaagtctgtatcataataatttgcactattgaagctatatgcgttgtatttacaGGACTTCTCCAGAGGACATAAAGGCTCTGAGATTGATAACTGCCATTAAAACTCCATACCTACCTGATGGTCGTTTTGATCTTGAAGCATATGATGACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - ttcatgt
- - - - - - - -gtttctg
- - - - - - - - - - - - - - - -tgctggt
- - - - - - - - - - - - - - - - - - - - - - - - -gtctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatatgc