Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

tgtaagtatatgtatatatttcagctaggttaaatggtgaaattattttaatttaactagtgattctgagtttcagttttatatatgcaattaggttaaatattacatgtttgatctataacttaaaaacatatatacgagttaggcacttatattgaacaaatttaattttcaGCTTGGTGGACCTACTTGGACTGTGCAATTGGGTAGAAGAGACTCAACCACTGCAAGTTTAAGTTCTGCTAACTCAGACTTGCCTGCTCCCACTTCAAGT

Basic information

species Glycine max
transcript GLYMA18G44310.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13480560|gb|BG509903.1|BG509903
EST:     GCTGATATCCTTGCTGTAGCAGCAAGAGACTCGGTTGTAGC                         TCTTGGTGGACCTACTTGGACTGTGCAATTGGGTAGAAGAGACTCGACCAC
genomic: GCTGATATCCTTGCTGTAGCAGCAAGAGACTCGGTTGTAGCtgtaagtata ... ttaattttcaGCTTGGTGGACCTACTTGGACTGTGCAATTGGGTAGAAGAGACTCAACCAC
EST: gi|308098002|gb|HO761173.1|HO761173
EST:     GTTTCTTGTGCTGATATCCTTGCTGTAGCAGCAAGAGACTCGGTTGTAGC                         TCTTGGTGGACCTACTTGGACTGTGCAATTGGGTAGAAGAGACTCAACCAC
genomic: GTTTCTTGTGCTGATATCCTTGCTGTAGCAGCAAGAGACTCGGTTGTAGCtgtaagtata ... ttaattttcaGCTTGGTGGACCTACTTGGACTGTGCAATTGGGTAGAAGAGACTCAACCAC
EST: gi|15000427|gb|BI321241.1|BI321241
EST:     GTTTCTTGTGCTGATATCCTTGCTGTAGCAGCAAGAGACTCGGTTGTAGC                         TCTTGGTGGACCTACTTGGACTGTGTAATTGGGTAGAAGAGACTCAACCAC
genomic: GTTTCTTGTGCTGATATCCTTGCTGTAGCAGCAAGAGACTCGGTTGTAGCtgtaagtata ... ttaattttcaGCTTGGTGGACCTACTTGGACTGTGCAATTGGGTAGAAGAGACTCAACCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacttaaaaacatatatacgagttaggcacttatattgaacaaatttaattttcaGCTTGGTGGACCTACTTGGACTGTGCAATTGGGTAGAAGAGACTCAACCACTGCAAGTTTAAGTTCTGCTAACTCAGACTTGCCTGCTCCCACTTCAAGT
                                                 ttttc  CT-rich tract
                            acttatattgaacaaa  TA-rich tract