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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

taagtgttgtgtgccttcaccagttctttaggcaacctcacctcagagggggataaacttaaaatttcacacaaagcattctttccactgaattctcttgatatcgacaatcaatttattatgcagaACAAACATTATGCTTTGATTTACTGCTTTGAGTTTCTGGCAATTGAGGGAAGACACAAGAATTGGCAGGACTGTTTCAGCCAATTGGACTTGCCCGAGGA

Basic information

species Glycine max
transcript GLYMA18G43600.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151396862|gb|EV266735.1|EV266735
EST:     CGAGCTAAATTCATTGGAAGCATGTGCTCTCAATGTTTTGAATGATGTGA                         ACAAACATTATGCTTTGATTTACTGCTTTGAGTTTCTGGCAATTGAGGGAA
genomic: CGAGCTAAATTCATTGGAAGCATGTGCTCTCAATGTTTTGAATGATGTGGtaagtgttgt ... attatgcagaACAAACATTATGCTTTGATTTACTGCTTTGAGTTTCTGGCAATTGAGGGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagcattctttccactgaattctcttgatatcgacaatcaatttattatgcagaACAAACATTATGCTTTGATTTACTGCTTTGAGTTTCTGGCAATTGAGGGAAGACACAAGAATTGGCAGGACTGTTTCAGCCAATTGGACTTGCCCGAGGA
                       tcttgat  putative branch site (score: 4)
                                  acaatcaatttattat  TA-rich tract