1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
agtgtgttcctcactctcttactcttaatatttgtggtctcaaattttatctgggttttggttattttatacattggacacaatttttttctggaaccttgctggagttcactttttttttttaaatttacattttttgttttgctaagattgcactggatttttttttctgtgtttgtctatgattttacaGAGGCCTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCGAAGATTGTGGATATTTGTGAGAAAGGGGATTCATACATTAGAG
species | Glycine max |
transcript | GLYMA18G43390.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTCTGCCGAAGTTGTCACCAAATACAAAACCGCTGCTGAGATCGTTAAC AACGCCTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCGAAGATTGTGEST: gi|192300664|gb|FG991076.1|FG991076
genomic: CTTCTGCCGAAGTTGTCACCAAATACAAAACCGCTGCTGAGATCGTTAACagtgtgttcc ... tgattttacaGAGGCCTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCGAAGATTGTG
EST: CTTCTGCCGAAGTTGTCACCAAATACAAAACCGCTGCTGAGATCGTTAAC AAGGCCTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCGAAGATTGTGEST: gi|151398254|gb|EV268132.1|EV268132
genomic: CTTCTGCCGAAGTTGTCACCAAATACAAAACCGCTGCTGAGATCGTTAACagtgtgttcc ... tgattttacaGAGGCCTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCGAAGATTGTG
EST: CTTCTGCCGAAGTTGTCACCAAATACAAAACCGCTGCTGAGATCGTTAAC AAGGCCTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCGAAGATTGTGEST: gi|14126302|gb|BG790740.1|BG790740
genomic: CTTCTGCCGAAGTTGTCACCAAATACAAAACCGCTGCTGAGATCGTTAACagtgtgttcc ... tgattttacaGAGGCCTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCGAAGATTGTG
EST: CTTCTGCCGAAGTTGTCACCAAATACAAAACCGCTGCTGAGATCGTTAAC AAGGCCTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCGAAGATTGTGEST: gi|14258932|gb|BG881831.1|BG881831
genomic: CTTCTGCCGAAGTTGTCACCAAATACAAAACCGCTGCTGAGATCGTTAACagtgtgttcc ... tgattttacaGAGGCCTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCGAAGATTGTG
EST: CTTCTGCCGAAGTTGTCACCAAATACAAAACCGCTGCTGAGATCGTTAAC AAGGCCTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCGAAGATTGTG
genomic: CTTCTGCCGAAGTTGTCACCAAATACAAAACCGCTGCTGAGATCGTTAACagtgtgttcc ... tgattttacaGAGGCCTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCGAAGATTGTG
tgttttgctaagattgcactggatttttttttctgtgtttgtctatgattttacaGAGGCCTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCGAAGATTGTGGATATTTGTGAGAAAGGGGATTCATACATTAGAG
atttttttttctgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgtgttcctcactctcttactcttaatatttgtggtctcaaattttatctgggttttggttattttatacattggacacaatttttttctggaaccttgctggagttcactttttttttttaaatttacattttttgttttgctaagattgcactggatttttttttctgtgtttgtctatgattttacaGAGGCCTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCGAAGATTGTGGATATTTGTGAGAAAGGGGATTCATACATTAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA