Sequence
atgc intronic sequence ATGC exonic sequence...tacataagaatgtaagatggattgtgaaaatgtgttagaaatctttgatattacttgtgattatgattacttaatctactatatgttttcttttttgtagGAGACCCTCCACAGTAGAGGAAATACTTACAATTGAGATCAAGCCAGGTTGGAAGAAAGGAACAAAAATAACTTTTCCTGAAAAGGGAAATGAGCAGAGA
Basic information
species | Glycine max |
transcript | GLYMA18G43110.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22931695|gb|BU548834.1|BU548834EST: CAAGAAAATGAAGATTTCAAGGGATGTTAGTGATGCCAGTGG GAGACCCTCCACAGTAGAGGAAATACTTACAATTGAGATCAAGCCAGGTTG
genomic: CAAGAAAATGAAGATTTCAAGGGATGTTAGTGATGCCAGTGGgtgagttgtc ... ttttttgtagGAGACCCTCCACAGTAGAGGAAATACTTACAATTGAGATCAAGCCAGGTTG
EST:
gi|12774748|gb|BG239675.1|BG239675EST: GACTACCAAGAAAATGAAGATTTCAAGGGATGTTAGTGATGCCAGTGG GAGACCCTCCACAGTAGAGGAAATACTTACAATTGAGATCAAGCCAGGTTG
genomic: GACTACCAAGAAAATGAAGATTTCAAGGGATGTTAGTGATGCCAGTGGgtgagttgtc ... ttttttgtagGAGACCCTCCACAGTAGAGGAAATACTTACAATTGAGATCAAGCCAGGTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgatattacttgtgattatgattacttaatctactatatgttttcttttttgtagGAGACCCTCCACAGTAGAGGAAATACTTACAATTGAGATCAAGCCAGGTTGGAAGAAAGGAACAAAAATAACTTTTCCTGAAAAGGGAAATGAGCAGAGA
acttaat putative branch site (score: 4)
tatgttttctttttt putative PPT
tatatgttttcttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tacataagaatgtaagatggattgtgaaaatgtgttagaaatctttgatattacttgtgattatgattacttaatctactatatgttttcttttttgtagGAGACCCTCCACAGTAGAGGAAATACTTACAATTGAGATCAAGCCAGGTTGGAAGAAAGGAACAAAAATAACTTTTCCTGAAAAGGGAAATGAGCAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - -gaatgta
- - - - - - - - - -gattgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - acttgtg