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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatcaaagtcaactaaaaaaaatagaaatcactttttttttttttaacttctattatgtctaatgaatcggtgttttagGTGGCTCAAGTGCTTTTGACACTGCCCTATTCTTTCTCTCAACTGGGCATGCTATCAGGAATCTTGCTTCAGATTTTCTATGGAATCTTGGGAAGTTGGA

Basic information

species Glycine max
transcript GLYMA18G42640.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G42640.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0007g02030.t01 (Vitis vinifera), 3'ss of exon 2
gtaaaatcaaagtcaactaaaaaaaatagaaat--cactttttttttttttaacttctatt--atgtctaatgaatcggtgtttt-----------------agGTGGCTCAAGTGCTTTTGACACTGCCCTATTCTTTCTCTCAACTGGGCATGCTATCAGGAATCTTGCTTCAGATTTTCTATGGAATCTTGGGAAGTTGGA
|||||  || |    |||   ||||| ||| ||    ||| || ||||||    |   |||  | |   ||  ||      ||||                 ||||||| ||||| || |||||||||||||| || |||||||| ||||||||||||||||| ||| |  | ||||| ||||||||  || ||||||| ||||
gtaaagccagac---actgggaaaaagagagatggtgcttcttcttttttccgttggaatttcaagcacaagaaaataacattttttggttatgctgatcgcagGTGGCACAAGTTCTGTTGACACTGCCCTACTCCTTCTCTCAGCTGGGCATGCTATCAGGGATCATATTCCAGATATTCTATGGCCTCGTGGGAAGCTGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193303948|gb|FK270761.1|FK270761
EST:     GGCATGGAGGCTCTGTTTGGGACGCATGGTTCAGCTGTGCTTCAAATCAA                         GTGGCTCAAGTGCTGTTGACACTGCCCTATTCTTTCTCTCAACTGGGCATG
genomic: GGCATGGAGGCTCTGTTTGGGACGCATGGTTCAGCTGTGCTTCAAATCAAgtaaaatcaa ... ggtgttttagGTGGCTCAAGTGCTTTTGACACTGCCCTATTCTTTCTCTCAACTGGGCATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaatcactttttttttttttaacttctattatgtctaatgaatcggtgttttagGTGGCTCAAGTGCTTTTGACACTGCCCTATTCTTTCTCTCAACTGGGCATGCTATCAGGAATCTTGCTTCAGATTTTCTATGGAATCTTGGGAAGTTGGA
        tttttttttttttaac  TA-rich tract